PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g02350.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 692aa    MW: 77408.5 Da    PI: 7.4312
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g02350.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-2373174199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv+++
  Zjn_sc00034.1.g02350.1.sm.mkhc  73 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSK 149
                                     99*****************************7555544..58************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD ++F   + +++el+v+v+r+
  Zjn_sc00034.1.g02350.1.sm.mkhc 150 RLVAGDAFIFL--RGENGELRVGVRRA 174
                                     ***********..449999*****996 PP
2Auxin_resp108.95.2e-36199280183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha++tks+F+v+Y+Pr+s+seF++++++++++lk+++s+G Rf+m+fe+e+++e+r++Gt+vg ++ldp  Wp+S W
  Zjn_sc00034.1.g02350.1.sm.mkhc 199 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESLKNNYSIGVRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPESSW 276
                                     89*********************************************************************.9****** PP

                      Auxin_resp  80 rsLk 83 
                                     r Lk
  Zjn_sc00034.1.g02350.1.sm.mkhc 277 RYLK 280
                                     *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-4065202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-4066188IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-2171173No hitNo description
PROSITE profilePS5086311.92873175IPR003340B3 DNA binding domain
PfamPF023623.2E-2173174IPR003340B3 DNA binding domain
SMARTSM010191.8E-2373175IPR003340B3 DNA binding domain
PfamPF065071.1E-32199280IPR010525Auxin response factor
PfamPF023094.4E-5614669IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MNQVAQNQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQI MLMPEPEQTE AAAVEKASSG  60
SNTTPPRPAV KSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG  120
MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQLSN  180
VPSSVISSQN MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM ESLKNNYSIG  240
VRFRMRFEGE EAPEQRFTGT IVGCENLDPL WPESSWRYLK VRWDEPSTIP RPDRVSPWNI  300
EPASSPPVNP LPLTSTRAKR PRQNAPPPSL EPSVLAKEGV SRVDVDSAQT QQNQNSVLQG  360
QEQMTLRNNL TESSDSDATV QKPMLWSPSA NGKSRAQTFQ QRSTGNWMQL GRHETDFKDG  420
HSTSQSFGDS QGLFMQAFDD NHNRLSGFNN QFDQVPAHRY ADPYLFTHLQ PSLTVESSTR  480
MHAAGNEFRF WNDQNVIYGN SSDPQSFRIG QNPSNWLSQP YARVEQPRIV RPHASVAPFD  540
FEKTRGGSGF KIFGFKVDSI NASPIPLNSP AAVHEDVIQT QSSAMNEVQL VQTDIPEISA  600
STAGTSTENE KSSQQGPQSS KDIQSKSQGA STRSCTKVHK QGVALGRSVD LSKFCDYDVL  660
KAELDKMFEF NGCLSAWCMR NFHCDGSQPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-143130556357Auxin response factor 1
4ldw_A1e-143130556357Auxin response factor 1
4ldw_B1e-143130556357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971147.10.0auxin response factor 4 isoform X1
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEM30.0K3XEM3_SETIT; Auxin response factor
STRINGSi000340m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]