PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g01890.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 771aa    MW: 83020.9 Da    PI: 7.2545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g01890.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05101123123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zjn_sc00034.1.g01890.1.am.mk 101 FVCEICHKGFQRDQNLQLHRRGH 123
                                   89******************988 PP
2zf-C2H211.70.0008217235523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dCg++Fsr++++++H   +
  Zjn_sc00034.1.g01890.1.am.mk 217 DCGTVFSRRDSFVTHRAFC 235
                                   9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.12E-6100123No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4175207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.12E-6182207No hitNo description
Gene3DG3DSA:3.40.50.18201.2E-37560673IPR029058Alpha/Beta hydrolase fold
PfamPF005611.6E-14561665IPR000073Alpha/beta hydrolase fold-1
SuperFamilySSF534748.74E-35561769IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18206.0E-15674769IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MSRAECTAGG LSSVSNTATQ VEEELLQQRP QRRYRVIKPF MGSPPAMGSG DDGDLQRITG  60
TSEPLAAPPA AKKKRSLPGT PDPSAEVIAL SPKTLTATNR FVCEICHKGF QRDQNLQLHR  120
RGHNLPWKLR QRAGGGGPAD DGGGGPPRKR VYVCPEASCV HHNPARALGD LTGIKKHYCR  180
KHGEKKWKCE RCAKRYAVQS DWKAHAKVCG TREYKCDCGT VFSRRDSFVT HRAFCDALAQ  240
ENSKLVQPVN MAATVAYRLQ GNQAAHLHLE LQADDYLDAV EDDFVTNTTS WSPQLQLLPV  300
SEDVSNPLIL PSPLGMLSSL AARTVAPSPA AFPFSGSTNI GAMGLNGPPV DPTVGFASAS  360
MSATALLQKA AALGATTSSG FGPMLSPFGP VRDGFPSPVQ TQLVGFDVGG GPFPGQYYRG  420
GPMTRAIGLL MQGGLRAPDR PREDDKRVVD YMGVDDDQSL DMDPFLREVM GLGLTRPRRC  480
AQASTGAGRR DFCVSGFEGC LTSLDDAVFL DVSLLELDFS NGWQGEPLIL VGHGKSSIDR  540
AVSVSQRKIV AAVELVAPVK HFFLVHGLAH GAWCWYKVVA PLRAAGHRVT ALDLAASGVH  600
PARIEEVASF EDYSRPLLEA VAAATDGERL VLVGHSLGGL TVALAMERFP RKIAAAVFLA  660
ASMPCVGKHM SVTIEEDLEL AKLLARPGSQ YMEDPIMKDE TLLTDGNYGA VKRVFVIAMA  720
DSSMTEEMQR QMIELSPGAE VEEIAGADHM AMLSKPRELC DVLIKIANKF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sty_A1e-5656077013266Methylketone synthase 1
3sty_B1e-5656077013266Methylketone synthase 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.11e-164protein indeterminate-domain 2-like
TrEMBLA0A2T7DBX21e-168A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-98indeterminate(ID)-domain 2