PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g01860.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 311aa    MW: 33468.4 Da    PI: 9.4953
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g01860.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-54163258297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p
  Zjn_sc00034.1.g01860.1.am.mk 163 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDP 243
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   ++ yl+kyre+eg++
  Zjn_sc00034.1.g01860.1.am.mk 244 MRRYLHKYREVEGDR 258
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-50159269IPR009072Histone-fold
SuperFamilySSF471133.06E-38165269IPR009072Histone-fold
PfamPF008081.6E-26168231IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.3E-17196214No hitNo description
PROSITE patternPS006850199215IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.3E-17215233No hitNo description
PRINTSPR006157.3E-17234252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MWRASAWLQA RVLPRAHQSR SNTTTWMEPG ISLESSAHLP TLSRRPVVCS KAIVSSMESC  60
HPLARSPAGR AEVPGGRHQA GPQPSRSSRS RGDISTAPRT TAASASLMQT QARHYSIFTR  120
ASHHHLPLSH QALIKLAGMA DHHGQEDDDG RRAGGAGAAE EIKEQDRLLP IANVGRIMKQ  180
ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDDY  240
VDPMRRYLHK YREVEGDRAA AAAASRGAGG PPDHPASGSG AAAGPSGTGH FMFGAVDRSD  300
NTSSGARHHQ Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-41162253192Transcription factor HapC (Eurofung)
4g92_B5e-41162253192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-143EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JTD01e-77A0A0E0JTD0_ORYPU; Uncharacterized protein
STRINGOPUNC01G42210.12e-78(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-55nuclear factor Y, subunit B5