PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g01400.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 331aa MW: 36598.8 Da PI: 6.5175

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g01400.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.8	1.5e-102	9	326	73	374
GRAS 73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153 + +e++aa++ ++++P+l+++ +aNq +le +e e+ vH++D++ +QW+ Ll+ +a+Rpegpp+lR+Tgv++ Zjn_sc00034.1.g01400.1.am.mk 9 TAAEVAAARRHIVDLCPFLRLAGAAANQSVLEVMEAEKVVHVVDLGGADATQWLELLHLFAARPEGPPHLRLTGVSE---- 85 46788999999****************************************************************.... PP GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................... 214 ++e l +t+ L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala+ ++lqlh ll Zjn_sc00034.1.g01400.1.am.mk 86 HREILTQTAMVLSKEAERLDVPFQFNP-VVTRLDTLDVESLRVKTGEALAITSSLQLHCLLasdddsaavvgkdkdsrrsp 165 9**********************.79*******************************************9997 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 + +++s+ d++L ++++lsPk+vvv+eqea+hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei Zjn_sc00034.1.g01400.1.am.mk 166 eSGLSPSTSRVDAFLGALWGLSPKIVVVTEQEASHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEI 246 522233444799***************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n+vac gaerrerhe+le+W +r+e aGF+ vpls++a qa++ + + dg++v ee+gs++l+W+dr+++svSaWr Zjn_sc00034.1.g01400.1.am.mk 247 KNIVACDGAERRERHERLERWARRMEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 326 *****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.995	1	306	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-100	9	326	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLMPRAAPTA AEVAAARRHI VDLCPFLRLA GAAANQSVLE VMEAEKVVHV VDLGGADATQ 60 WLELLHLFAA RPEGPPHLRL TGVSEHREIL TQTAMVLSKE AERLDVPFQF NPVVTRLDTL 120 DVESLRVKTG EALAITSSLQ LHCLLASDDD SAAVVGKDKD SRRSPESGLS PSTSRVDAFL 180 GALWGLSPKI VVVTEQEASH NAPALTERFV EALNYYAALF DCLEVVAARG SVERARVERW 240 MLGEEIKNIV ACDGAERRER HERLERWARR MEGAGFGRVP LSYYALLQAR RAAQGLGCDG 300 FKVREEKGSF FLCWQDRAIF SVSAWRGRRI D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-50	23	328	105	381	Protein SCARECROW
5b3h_A	2e-50	23	328	104	380	Protein SCARECROW
5b3h_D	2e-50	23	328	104	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819415.1	0.0	scarecrow-like protein 3
Refseq	XP_025819416.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	1e-125	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2S3HN37	0.0	A0A2S3HN37_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DBR7	0.0	A0A2T7DBR7_9POAL; Uncharacterized protein
STRING	Sb03g045660.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-102	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]