PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g01020.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 347aa MW: 35661.2 Da PI: 8.0535

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g01020.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.2	2.1e-68	116	282	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkr 76 +sg+++CqdCGnqakkdC+h+RCRtCCksrgfdC+th+kstWvpaa+rrerqq + s++++ +a +++sk++r Zjn_sc00034.1.g01020.1.sm.mk 116 GSGATTCQDCGNQAKKDCSHNRCRTCCKSRGFDCSTHIKSTWVPAARRRERQQLGGSGSASSSPAAastaaaVASTSKKPR 196 57889********************************************998765443332222234433334444444 PP DUF702 77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiL 147 ++q+++s+t++s+a+++++++t+s lP++v+++avf+cvrv+s+ddge+e+aYq+ v+i+GhvfkG+L Zjn_sc00034.1.g01020.1.sm.mk 197 --LLSSQTTTSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIDDGEDEYAYQAMVTINGHVFKGFL 275 ..56999999***********99999*********************************************** PP DUF702 148 ydqGlee 154 ydqG+++ Zjn_sc00034.1.g01020.1.sm.mk 276 YDQGVDD 282 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-63	119	281	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.0E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-28	233	280	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MRQAAAAMNY GMADVGMVVV APAASFRHTH HHHHHHDAAA AAAAAAADPI FPLLSGGPSV 60 LDPETARSGA PSSSAIQFWQ SPPPVGANPN PSASSPFAYL KKPLPMLDTG GGGSSGSGAT 120 TCQDCGNQAK KDCSHNRCRT CCKSRGFDCS THIKSTWVPA ARRRERQQLG GSGSASSSPA 180 AASTAAAVAS TSKKPRLLSS QTTTSHTSTS NATTPRSFDT TSSHQDASFR DSLPRQVRAP 240 AVFKCVRVTS IDDGEDEYAY QAMVTINGHV FKGFLYDQGV DDGRHGSTSN DDSTAGVPNM 300 SELHLGGGPG SSNAREGGSS MLPTELYGGG GGGQNMMGGS GYGNTMS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MRQAAAAMNY GMADVGMVVV APAASFRHTH HHHHHHDAAA AAAAAAADPI FPLLSGGPSV  60
LDPETARSGA PSSSAIQFWQ SPPPVGANPN PSASSPFAYL KKPLPMLDTG GGGSSGSGAT  120
TCQDCGNQAK KDCSHNRCRT CCKSRGFDCS THIKSTWVPA ARRRERQQLG GSGSASSSPA  180
AASTAAAVAS TSKKPRLLSS QTTTSHTSTS NATTPRSFDT TSSHQDASFR DSLPRQVRAP  240
AVFKCVRVTS IDDGEDEYAY QAMVTINGHV FKGFLYDQGV DDGRHGSTSN DDSTAGVPNM  300
SELHLGGGPG SSNAREGGSS MLPTELYGGG GGGQNMMGGS GYGNTMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	1e-156	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-65	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2T7DBH9	1e-155	A0A2T7DBH9_9POAL; Uncharacterized protein
STRING	Pavir.Ea03961.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-59	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]