PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00033.1.g01800.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 534aa MW: 57522.4 Da PI: 10.3447

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00033.1.g01800.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	217	276	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zjn_sc00033.1.g01800.1.am.mk 217 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 276 78999****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	206	274	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-32	218	275	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	221	275	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	223	259	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MGSHEATARW RRRRSGQGRT GKRRRPGRRR KSGIDRRIKN RTVEATSRAC GSRSSPWPPP 60 APRTPLIPPP PLLLSSFHGR AEHQPAEILP ASSLTCIDHL PRFVSFSFSS NPLLNRETRE 120 RRAGGGGGDG LIKLFGTTIP VPEAGDAKDL QLSGGSSSGS IESDATKENN TRQQQDTSDP 180 SPQPEVVDAE DPKSSPRQQP GGDRDEANDR KEKLRKPDKV LPCPRCNSMD TKFCYFNNYN 240 VNQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKNKNALAAS YSFLQRVRAA AMPAGGDPLN 300 TNGTVLSFGG GNHQSGGPCS EGSSNRDDRN MGGTKDHVAV SNPANGVQHP ANMNGAPMWP 360 PYSCAPIPSH RPAYYPPPGI AIPIQPVAPG YWGCMLPGGW NLPWAPVPSP TSQGLSSPTS 420 APSVSSGADS LTVLGKHARP EGDEGRSHGS GMVWAPKTIR IDDADEVAKS SIWSLIGIKG 480 DKKNADMDGR KQHGTVFEPK HDAKTAKQEM ITSSPHLHAN PVALTRLLTF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MGSHEATARW RRRRSGQGRT GKRRRPGRRR KSGIDRRIKN RTVEATSRAC GSRSSPWPPP  60
APRTPLIPPP PLLLSSFHGR AEHQPAEILP ASSLTCIDHL PRFVSFSFSS NPLLNRETRE  120
RRAGGGGGDG LIKLFGTTIP VPEAGDAKDL QLSGGSSSGS IESDATKENN TRQQQDTSDP  180
SPQPEVVDAE DPKSSPRQQP GGDRDEANDR KEKLRKPDKV LPCPRCNSMD TKFCYFNNYN  240
VNQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKNKNALAAS YSFLQRVRAA AMPAGGDPLN  300
TNGTVLSFGG GNHQSGGPCS EGSSNRDDRN MGGTKDHVAV SNPANGVQHP ANMNGAPMWP  360
PYSCAPIPSH RPAYYPPPGI AIPIQPVAPG YWGCMLPGGW NLPWAPVPSP TSQGLSSPTS  420
APSVSSGADS LTVLGKHARP EGDEGRSHGS GMVWAPKTIR IDDADEVAKS SIWSLIGIKG  480
DKKNADMDGR KQHGTVFEPK HDAKTAKQEM ITSSPHLHAN PVALTRLLTF QEGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	30	RRRSGQGRTGKRRRPGRRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	2e-82	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-170	cyclic dof factor 1
TrEMBL	K4AA81	1e-169	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-56	cycling DOF factor 2