PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g04080.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 196aa    MW: 21186.8 Da    PI: 4.4935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g04080.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-181968255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Zjn_sc00031.1.g04080.1.am.mk 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 68
                                  69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-221977IPR016177DNA-binding domain
SMARTSM003806.0E-381982IPR001471AP2/ERF domain
CDDcd000181.05E-291978No hitNo description
PROSITE profilePS5103223.671976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-311977IPR001471AP2/ERF domain
PfamPF008477.9E-122068IPR001471AP2/ERF domain
PRINTSPR003671.2E-122031IPR001471AP2/ERF domain
PRINTSPR003671.2E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAMVLDNNVA AGELTAAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAALRLRGRD ARLNFPELVH RFRRPATAEP DDVRSAALEA AAQVRFAPDL TVTPRPGDDA  120
GCGGAGAEQL LAGVAWDDVL LCGGAADDLA ADQSSPSMWA ELAEAMLMAP PVWEGSTADN  180
DDWGQSSLWD LPVWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161980567ATERF1
3gcc_A1e-161980567ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726815e-87EU972681.1 Zea mays clone 385859 CBF-like protein mRNA, complete cds.
GenBankKJ7275115e-87KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449280.22e-83ethylene-responsive transcription factor ERF027
RefseqXP_025828349.14e-84ethylene-responsive transcription factor ERF022
TrEMBLA0A2S3IDY59e-83A0A2S3IDY5_9POAL; Uncharacterized protein
TrEMBLA0A2T7CLI18e-83A0A2T7CLI1_9POAL; Uncharacterized protein
STRINGPavir.J22217.1.p3e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-29ERF family protein