PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g03980.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 417aa    MW: 44028.8 Da    PI: 9.3084
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g03980.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-32112167359
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                   +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+ev++
  Zjn_sc00031.1.g03980.1.am.mk 112 GVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEVDD 167
                                   699*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-29113165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-30114165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-23114165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.893115164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.72E-19262330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-29263332IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-28272328IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MQRRTDQASP AAAAAVSFSL ERRRREEDEA RGGGSMDLSS AQGELPIPMH APASPYASGG  60
SAGGRVLQQL HRERGNNKGN EESPVRLPPS PPAASEDRGS GKKRAAGGGG SGVKYRECLK  120
NHAAAMGGNA TDGCGEFMPS GEEGSLEALK CSACGCHRNF HRKEVDDDDE DLNADVCTGH  180
GHRAGRRLLA PAMPPHLKSG GAGGGLLVTA DPYGVGAYAA MRAVPPPPPL HHHHHQQFVN  240
AMPLSAVHTS EESDGMDGGA GARGSSSSLL SKKRFRTKFT AEQKARMLDF AERVGWRLQK  300
LDDGMVHAFC QEIGVKRRVL KVWMHNNKHS LATKRLEAPP GMASAPAPPP PMPMVPPPPM  360
QMVPPPPPAL PSSPQPGPSF HLGGPSSQPP QHMAMPMVPP PPFHHRGSGS PAPLKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242713301675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668555e-95EU966855.1 Zea mays clone 297761 mRNA sequence.
GenBankKJ7280455e-95KJ728045.1 Zea mays clone pUT6191 ZF-HD transcription factor (ZHD1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678039.11e-114zinc-finger homeodomain protein 4 isoform X1
RefseqXP_020179853.11e-114zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N876e-85ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A453HGH91e-113A0A453HGH9_AEGTS; Uncharacterized protein
TrEMBLK7TRK31e-113K7TRK3_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGTraes_4DS_F3750ABFD.11e-114(Triticum aestivum)
STRINGGRMZM2G068330_P021e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-54homeobox protein 31