PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g03130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 557aa    MW: 59302.6 Da    PI: 6.9656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g03130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17368456197
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   ffkv+ p+ +++   l +p +f e  ++ ++  + ++l+ +sg sW+v l  + +s++ v+t+GWkeF++++ L  g f++
  Zjn_sc00031.1.g03130.1.am.mk 368 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 442
                                   8999988887765..9******954465544..48***************..***************************** PP

                                   EEE-SSSEE..EEEEE CS
                            B3  82 Fkldgrsefelvvkvf 97 
                                   F++dg sef   v vf
  Zjn_sc00031.1.g03130.1.am.mk 443 FTYDGCSEF--SVAVF 456
                                   ***986776..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-21366457IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19367457IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-16368456No hitNo description
SMARTSM010191.1E-13368462IPR003340B3 DNA binding domain
PfamPF023628.0E-15368454IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957381459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MQGASVGEDG RRPGAVAGRE EGGTDAAHTL LSVLPFPSDP PLHLCYLVSG DALDSLHLLA  60
SLLSPSPTLS SAHLVDVAFL AASTIDFDAA ASRACRAVEG GGSPALTSDK AVTAVDQFEA  120
KVAAAARGWG AGWERRGGEG RRETGEEGAQ IRWGQMNRWG EQSAGDERWR SGVVLARDVV  180
QKIHFGGVPK VSPKSSYRGG RALHLSQGIA TARGTAVCPC SPTHPVKEVE RQSVSHYRGS  240
EMVACPALPA GASESVGGDS EVSQNSEFRC CVTRGEDALV AVTRRPEIRA PAGVRQPEIE  300
TEGHTKQQGR SSAAAATAVM LNGTGKEKEK QVEKGRDRRK EKRSGKEQRK EIAREVQDDV  360
PIAAGEQFFK VFFPEQSGEG LKIPSPFHEY VEEAPNRVVS LRGPSGHSWR VVLTTGSQGL  420
VFTQGWKEFA RDHSLIPGHF LLFTYDGCSE FSVAVFTPLG VEDKAALKVQ PCKELLVKQE  480
EEEGTVDVAA DGTLEASDTP FLEGNGATTG KRSTKPTQPI PAVGCRIRFE SPALGLPGRP  540
APCCFIRFSV GGSKTTC
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-16B3 family protein