PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00031.1.g01750.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 175aa MW: 19992 Da PI: 5.1407 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.8 | 5.1e-17 | 31 | 95 | 1 | 55 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwe 55 +Wt+++v++Li+a+++++e+++++ +kk++W+++sk+m +rg+++sp+qC++k + Zjn_sc00031.1.g01750.1.am.mkhc 31 KWTDSMVKLLITAVSYTGEDYGADLgggkrnfsimQKKGKWKAISKVMGDRGCHVSPQQCEDKCK 95 7*********************9744455777788***************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.8E-12 | 29 | 96 | No hit | No description |
CDD | cd00167 | 0.0095 | 31 | 96 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSDDEEHELT EDANENPSGK GKKSSAWHRM KWTDSMVKLL ITAVSYTGED YGADLGGGKR 60 NFSIMQKKGK WKAISKVMGD RGCHVSPQQC EDKCKEDHDS RRDVSGDVDE DDQSADSDYY 120 EDDEEHHAVH TNMREPSMFK RMRHSDLALV NSSPQEGSAR NLFCIRMRFA WDLVQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143969.2 | 1e-49 | uncharacterized protein LOC100276786 | ||||
Refseq | XP_020403187.1 | 1e-49 | uncharacterized protein LOC100276786 isoform X1 | ||||
TrEMBL | A0A1E5UTG1 | 1e-58 | A0A1E5UTG1_9POAL; Uncharacterized protein | ||||
STRING | Sb05g003890.1 | 2e-48 | (Sorghum bicolor) | ||||
STRING | GRMZM2G126148_P02 | 2e-48 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP44648 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 3e-28 | sequence-specific DNA binding transcription factors |