PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00031.1.g00980.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 506aa MW: 56635.7 Da PI: 7.1485 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 288.6 | 1.7e-88 | 34 | 465 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl 83 +L ecA +v++g + a+++L+r+ la+ + pm Rla ++ ALa+ l+ + +al +ps+ ++ ++ aa+ Zjn_sc00031.1.g00980.1.am.mk 34 ALWECAAHVAAGRFDGASRCLERVLGLATIGDGPMPRLARILADALARCLLLRLGPVNRALiQPSAYL--DQRSVRAARYG 112 699*********************************************99997888887774555554..33333345556 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 f+++ P+l++++++ N+aIl+a+++e+ vH+iD++ + ++ QW+ L++a++ Rp+g+p+l iT+v++ + l + Zjn_sc00031.1.g00980.1.am.mk 113 FVKLLPFLRVAYVAINRAILDATDKEKYVHVIDLSgpAANPWQWLKLMRAMSRRPGGAPNLHITVVHD----DGVFLADMW 189 **********************************866799****************************....9******** PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll......................... 214 rL+k Ae+l++ f f+ rle+l++++L ++++g al +++lq+h ll Zjn_sc00031.1.g00980.1.am.mk 190 ARLRKEAESLNMAFTFHG-FLGRLETLDFDKLhdvlDIRSGYALSFSCALQMHGLLavedaaavnvgtstqaswpsgasrf 269 ******************.689999999999866668999***************************************** PP GRAS 215 .................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 + ++ +++ ++v+ +sPkv+vvveqea+hn+++F+ rf ea+ Zjn_sc00031.1.g00980.1.am.mk 270 vrfaggqemnkrdvhpdpspttplcrvaptptpWPPSRVPPLLTRFQHAVRAVSPKVLVVVEQEANHNEPEFAVRFQEAFG 350 *****************************9998334444445668************************************ PP GRAS 263 yysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 yy+alfd+l+ +++e eer+ vE++llg+ei++v+ eg errerhe l++W +r+ +aGF+pvpls++a ++a+ + Zjn_sc00031.1.g00980.1.am.mk 351 YYAALFDALQDRAGPERqmhEERAQVEQVLLGEEIKDVLVREGMERRERHEPLHRWAARMAHAGFGPVPLSYEAKNEADEV 431 *********55555444488************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 lrk + ++y+ e+ ++l+l+ ++rpL++vSaWr Zjn_sc00031.1.g00980.1.am.mk 432 LRKLALREYENREHGNCLLLCRSERPLYAVSAWR 465 *****999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.344 | 5 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-86 | 34 | 465 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MTDHPASNAR QQPPQEQEDE EGRLAASLVH LPLALWECAA HVAAGRFDGA SRCLERVLGL 60 ATIGDGPMPR LARILADALA RCLLLRLGPV NRALIQPSAY LDQRSVRAAR YGFVKLLPFL 120 RVAYVAINRA ILDATDKEKY VHVIDLSGPA ANPWQWLKLM RAMSRRPGGA PNLHITVVHD 180 DGVFLADMWA RLRKEAESLN MAFTFHGFLG RLETLDFDKL HDVLDIRSGY ALSFSCALQM 240 HGLLAVEDAA AVNVGTSTQA SWPSGASRFV RFAGGQEMNK RDVHPDPSPT TPLCRVAPTP 300 TPWPPSRVPP LLTRFQHAVR AVSPKVLVVV EQEANHNEPE FAVRFQEAFG YYAALFDALQ 360 DRAGPERQMH EERAQVEQVL LGEEIKDVLV REGMERRERH EPLHRWAARM AHAGFGPVPL 420 SYEAKNEADE VLRKLALREY ENREHGNCLL LCRSERPLYA VSAWRPWTFE VLDSINMAVP 480 LPAGQGPSTW TWPQQQQQAP FHNFTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-13 | 311 | 465 | 221 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619131.1 | 1e-124 | scarecrow-like protein 3 | ||||
TrEMBL | A0A1D6QHE2 | 1e-141 | A0A1D6QHE2_MAIZE; Scarecrow-like protein 3 | ||||
STRING | OS12T0138200-00 | 1e-124 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-71 | scarecrow-like 3 |