PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00030.1.g01610.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 477aa    MW: 50979.5 Da    PI: 8.6875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00030.1.g01610.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-15182227755
                           AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   r+++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zjn_sc00030.1.g01610.1.am.mk 182 RRRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 227
                                   6777.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.047177235IPR001471AP2/ERF domain
SMARTSM003802.5E-27177241IPR001471AP2/ERF domain
PRINTSPR003679.1E-6178189IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-19179237IPR016177DNA-binding domain
CDDcd000182.51E-12179236No hitNo description
Gene3DG3DSA:3.30.730.103.0E-24180235IPR001471AP2/ERF domain
PfamPF008473.2E-10182227IPR001471AP2/ERF domain
PRINTSPR003679.1E-6201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
LVHGAYSHYS FPCYHETSYP SNTTVAAAGG HQPSSVYASP QYGGGGYSHH QSSPAGWVSS  60
SMPSSSPSHH HHYQQQQLQF GGGVDDYHRG HVDLDQFSAL MGAASICTTT TTTTRSSAST  120
TYAPSAASCW ATEAFTGAHS SSAATVHANV IVDGSSRGDQ HLQVQPNCGD GDDADAALVG  180
GRRRPWGKYA AEIRDSTRNG ERVWIGTFDT PEAAALAYDQ AAYSMRGPGA VRNFPVRLVQ  240
ETLRDLGLSA AAAAGDSPVL ALKRRHCIRK RSPKGKKAAG EAQITATCSG YGKQKQAAAS  300
GVLELEDLGP DYLEELLALS YDPIRRAFHG RGLSIYCVAA SSARRVSNYW VEPWRGPVNT  360
ADMIKDSDNN NANDSLISLD RATKERTPAT LHELASGDAH LPRHGVRIVA SKTTVTLPPG  420
PTSVHVCPAV HPTMFSTPSP HTPSNPFPFA TVPPTPTAAP RHEKPHTPRA RRHRRLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-221802351772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.15e-68ethylene-responsive transcription factor 1
TrEMBLC5XCK53e-79C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.16e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-25ethylene response factor 1