PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g04470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 293aa    MW: 32004.6 Da    PI: 4.4396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g04470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-151462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Zjn_sc00029.1.g04470.1.sm.mk 14 RGPWSQEEDAILRSFVQRFGNAgNWIALPQRAGLKRCGKSCRLRWLNYL 62
                                  89******************99*************************97 PP
2Myb_DNA-binding40.27.8e-1369111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
  Zjn_sc00029.1.g04470.1.sm.mk  69 GGFTDEEDYLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                                   569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.976966IPR017930Myb domain
SuperFamilySSF466896.74E-2711109IPR009057Homeodomain-like
SMARTSM007171.8E-101364IPR001005SANT/Myb domain
PfamPF002495.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-221569IPR009057Homeodomain-like
CDDcd001673.73E-81662No hitNo description
PROSITE profilePS5129413.90567117IPR017930Myb domain
SMARTSM007171.6E-1167115IPR001005SANT/Myb domain
PfamPF002497.5E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2270116IPR009057Homeodomain-like
CDDcd001671.44E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCDKA RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPQRAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDYLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRFFAA  120
ADRKGTLPPP PPPPPPPTSS GDDGTAAVAT ESEPEYDRAP PDPSPTTPSL ANLDAAVVDN  180
DDELLVKSEQ LYSELMGLIE QQSAETSAME SLFTATSSTG TTPAVSSSSG SCNVWPAKDV  240
HDSGLLSESI SGLFDGDDVF GAADLMPAYS FQELLAASSY DEFTTVNQEL MYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-138AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.11e-115transcription factor MYB30 isoform X2
TrEMBLA0A3L6SJ651e-112A0A3L6SJ65_PANMI; Myb-related protein Zm38-like
STRINGGRMZM2G167829_P011e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-68myb domain protein 87