PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g03010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 315aa    MW: 33553.9 Da    PI: 9.5495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g03010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.1e-32136235192
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL
  Zjn_sc00029.1.g03010.1.sm.mk 136 FDKTVTPSDVGKLNRLVIPKQHAEKHfplelpsAGGESKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 216
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS.SEE.. CS
                            B3  75 kegDfvvFkldgr.sefel 92 
                                   ++gD+v F+++    +++l
  Zjn_sc00029.1.g03010.1.sm.mk 217 NAGDVVGFYRTAAgPDTKL 235
                                   *********7655455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-53658IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.4E-40127251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-31134230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-29134226No hitNo description
PfamPF023621.9E-28136236IPR003340B3 DNA binding domain
SMARTSM010196.3E-23136242IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606136240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDSASSLVDD TGGGCTDKLR ALAAAAAAVP ALEHGDAARA YDVAAQRFRG RDAVTNFRPL  60
ADADPDAAAE LRFLASRSKA EVVDMLRKHT YFDELAQNRR AFASAPTTFS SLAANNHDSS  120
SSSPSPASAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLELPSAG GESKGVLLNF  180
EDAEGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLNAGD VVGFYRTAAG PDTKLFIECK  240
LRPKNGAAVS VAANPVINVA SSAPVTKAVR LFGVDLLTAP APEAAMGTGC KRARDFAATP  300
TQAAFKKPLV ELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-521302462117B3 domain-containing transcription factor NGA1
5os9_B1e-521302462117B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278700.0KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-139AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-131Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6G2Q71e-133A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6DRN21e-133A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb02845.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-78related to ABI3/VP1 2