PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00029.1.g02540.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 23949 Da PI: 6.2274 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+ +G+g +W + +++ g++R++k+c++rw++yl Zjn_sc00029.1.g02540.1.am.mk 14 RGPWSPEEDEVLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.936 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-18 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.48E-9 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 66 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDEVLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDRIIC SFYSSIGSSF GAMYSSPSAL QPPALAPRYV DGAVPAPQQL 120 HAPSLTEYSP AAPPPPPPQP TGGVANSWAT TGGMTGLEDM FLPELLGSGE FPHGDLFGGG 180 FGSMLLQDRA PSSLQELAAY YFPNAQAEMW ADAKAPAGLC HSLT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679431 | 1e-115 | HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008675187.1 | 9e-58 | transcription factor MYB4 | ||||
TrEMBL | A0A3L6T1M0 | 6e-61 | A0A3L6T1M0_PANMI; Transcription factor RAX2-like | ||||
STRING | Pavir.J11789.1.p | 4e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 6e-50 | myb domain protein 84 |