PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g01760.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 313aa    MW: 34343.6 Da    PI: 10.143
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g01760.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.12.2e-1318104186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ ++    
  Zjn_sc00029.1.g01760.1.sm.mk  18 CWSEGETAALVDAWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS---- 94 
                                   7*******************************************999999*********************999886.... PP

                      trihelix  75 ssstcpyfdqle 86 
                                     s ++++ ql+
  Zjn_sc00029.1.g01760.1.sm.mk  95 --SPWAFYGQLD 104
                                   ..4688888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2316104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLELNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GQLDLLVGPT LSASGAAAGK  120
RPSPPRAVPM LRRRQSPSRS PSPPMALPLP NYGRGSNLPS AVLHNAAAAA AAAAAESDSY  180
DGYNNNNDYD DDAASQQSPS RSVSSRSGGA PPPPAVRSKR KASGSGGFGE LARAIETFAE  240
MYERMESAKQ RHAEEMERQR IKFLKDLELK RMQAFVDMQL QLARAKHARK GDASSEMLMF  300
THLMLGQLCS EDY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617751e-135EU961775.1 Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-140trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-144A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
STRINGSb03g030880.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-31sequence-specific DNA binding transcription factors