PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00029.1.g01130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 22081.6 Da PI: 7.0267 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.8 | 2e-20 | 91 | 125 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Zjn_sc00029.1.g01130.1.am.mk 91 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 125 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 8.55E-15 | 83 | 127 | No hit | No description |
SMART | SM00401 | 1.8E-19 | 85 | 135 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.694 | 85 | 121 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-17 | 89 | 125 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-13 | 90 | 122 | No hit | No description |
Pfam | PF00320 | 4.4E-18 | 91 | 125 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 91 | 116 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFSGDHH HYYMQCDSDG AYGGSVDCTL SLGTPSTRRA 60 EAGAARAHQP NGGTHWEQSS GRQQESAARR CANCDTTSTP LWRNGPRGPK SLCNACGIRY 120 KKEERRAAAA AVAPSPTLAS VDSGMEYAAG QPQQWGWYGS AAVAKAAASS FGMFGDAGAE 180 DGPCLPWGIG VMPPSPAFGS VREMPSLFQY Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184096.1 | 2e-91 | GATA transcription factor 20-like | ||||
Swissprot | Q9ZPX0 | 2e-27 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A1E5VS13 | 4e-92 | A0A1E5VS13_9POAL; Uncharacterized protein | ||||
STRING | MLOC_5372.1 | 2e-88 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 7e-28 | GATA transcription factor 19 |
Publications ? help Back to Top | |||
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