PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03480.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 439aa    MW: 48368.2 Da    PI: 9.5682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03480.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16133180148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Zjn_sc00028.1.g03480.1.am.mk 133 KGPWTPEEDVILVSYIQEHGPGNWRAVPVNTGLMRCSKSCRLRWTNYL 180
                                   79********************************************97 PP
2Myb_DNA-binding46.86.6e-15186231148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zjn_sc00028.1.g03480.1.am.mk 186 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 231
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-23124183IPR009057Homeodomain-like
PROSITE profilePS5129423.631128184IPR017930Myb domain
SuperFamilySSF466897.94E-30130227IPR009057Homeodomain-like
SMARTSM007175.2E-13132182IPR001005SANT/Myb domain
PfamPF002494.9E-15133180IPR001005SANT/Myb domain
CDDcd001673.77E-11135180No hitNo description
Gene3DG3DSA:1.10.10.601.1E-23184236IPR009057Homeodomain-like
SMARTSM007175.4E-13185233IPR001005SANT/Myb domain
PROSITE profilePS5129418.74185235IPR017930Myb domain
PfamPF002498.9E-13186231IPR001005SANT/Myb domain
CDDcd001671.11E-8188229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MYEPIPIGRP RPLGTTCSRR KQLAGTIYPS SVLPAPSTCG CGPSGRITGA NIDQHAHMSD  60
RIDRPYSQYV RTELASRLLR NRVFMETWSA RSPQARPGWI PLQRARPWIY RSPEKKKKKM  120
GRPPCCDKVG IKKGPWTPEE DVILVSYIQE HGPGNWRAVP VNTGLMRCSK SCRLRWTNYL  180
RPGIRRGNFT PHEEGIIVHL QSLLGNRWAA IASYLPQRTD NDIKNYWNTH LKKKLKKHQA  240
IGAIFAPPPP PSDLSSTTIP AAAFTGAGHV DHHRMITNPL STYSYAPRPT RSNPGDVTQL  300
IARRSSFAAA PGSSLDAESG TSSSSYASSM DNISKLLDGF MKSATPQNDV AAAQLNPPAA  360
EVNPLLPFES MSGAGCEVPP SFADVLPPQP VLMEPRSGHH DDQPAPLSSM EKWLLDEAAE  420
QVGDLMDLSD PWCSVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-241332354105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-2413123525128MYB TRANSFORMING PROTEIN
1mse_C4e-241332354105C-Myb DNA-Binding Domain
1msf_C4e-241332354105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574781e-146AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808268.11e-132transcription factor MYB30-like
SwissprotB3VTV71e-90MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A3L6P9F71e-137A0A3L6P9F7_PANMI; Transcription factor MYB30-like
STRINGSi010608m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-81myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]