PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g02950.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 508aa    MW: 55522.1 Da    PI: 6.9849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g02950.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.99.4e-101475001374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                   l++lL++cA  v++g + +a+ +L+ + +las d+  +++Rlaa+f+ ALa++l++ v++l++al +s++++ +   + aa
  Zjn_sc00028.1.g02950.1.am.mk  47 LIHLLYQCAAQVAAGAFDNANFYLELITQLASLDApLTLHRLAAVFADALARKLLNLVPGLSRALMTSTADSAEAHLVPAA 127
                                   689********************************89*****************************999999999999999 PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                   ++ +++  P+lk+++l++N+aI ea+ege+ vH++D++    +++QW+aL++ +  R+eg+p+lRiT+v+s    ske l 
  Zjn_sc00028.1.g02950.1.am.mk 128 RQHLFDKLPFLKLAYLATNRAIFEAMEGERFVHVVDLSgpTANPVQWIALFHLFCGRREGAPHLRITAVHS----SKELLA 204
                                   999**********************************955689****************************....9***** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll...................... 214
                                   +++  L+k Ae++++pf+f+  v+++l++l++++L     v++gEala+++v qlhrll                      
  Zjn_sc00028.1.g02950.1.am.mk 205 NMAGILTKEAEAFDIPFQFSG-VESSLDELDIDALrqvlGVRSGEALAISVVAQLHRLLaaddaskrhggsssltplqfia 284
                                   *********************.7999****9999855557888************************************** PP

                          GRAS 215 ..........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                                                             + +++ + +  +++++vk lsPk++vv+e+ea+hn++ F
  Zjn_sc00028.1.g02950.1.am.mk 285 rssprsfgellerelntrlqlspdsssvlvslspqspgsglaAAQHQRSAKLGKFMSAVKALSPKIMVVTEREANHNAAAF 365
                                   *****************************************9555555556888*************************** PP

                          GRAS 254 lerflealeyysalfdsleak............lpres...eerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                    erf ea++yy++lfd+le                  +    er+  E  +lg+ei+ vva egaer+erhe+l++W +r+
  Zjn_sc00028.1.g02950.1.am.mk 366 QERFDEAVNYYASLFDCLEHAseaaaqqrhhhhH---DavaAERARAESLVLGEEIRGVVAREGAERKERHERLAQWARRM 443
                                   ******************7665888888776432...135699************************************** PP

                          GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   + aG++ v+ls+ ++++a+ ll  +++ gy v ++   + l+++W+++pL+s+SaWr
  Zjn_sc00028.1.g02950.1.am.mk 444 DCAGMERVKLSYIVMMEARKLLLSCGWGGYDVTQDarGDGLFFCWHRKPLYSISAWR 500
                                   ********************************9764478999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.60421478IPR005202Transcription factor GRAS
PfamPF035143.3E-9847500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLSEDMASST ATSSPASSLY TPSPHGYGCG YGSWVQELTS DNEGVRLIHL LYQCAAQVAA  60
GAFDNANFYL ELITQLASLD APLTLHRLAA VFADALARKL LNLVPGLSRA LMTSTADSAE  120
AHLVPAARQH LFDKLPFLKL AYLATNRAIF EAMEGERFVH VVDLSGPTAN PVQWIALFHL  180
FCGRREGAPH LRITAVHSSK ELLANMAGIL TKEAEAFDIP FQFSGVESSL DELDIDALRQ  240
VLGVRSGEAL AISVVAQLHR LLAADDASKR HGGSSSLTPL QFIARSSPRS FGELLERELN  300
TRLQLSPDSS SVLVSLSPQS PGSGLAAAQH QRSAKLGKFM SAVKALSPKI MVVTEREANH  360
NAAAFQERFD EAVNYYASLF DCLEHASEAA AQQRHHHHHD AVAAERARAE SLVLGEEIRG  420
VVAREGAERK ERHERLAQWA RRMDCAGMER VKLSYIVMME ARKLLLSCGW GGYDVTQDAR  480
GDGLFFCWHR KPLYSISAWR PAASRLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-21352527217Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-106scarecrow-like 3