PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00028.1.g01730.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 359aa MW: 40752.3 Da PI: 5.7063

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00028.1.g01730.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.7e-19	70	131	25	85
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk+++++ +++ t++++++ +++ + Zjn_sc00028.1.g01730.1.sm.mkhc 70 MQKKGKWKAISKVMGKRGCLVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVEKPELLEGM 131 49*********************************************779999998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-14	71	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNHDQLSEFQ FGEHGRADHH QHHDTKNSMS DDEDHGVNED ATGSHTGKVS YTGEDPGADL 60 GGGRRNCAMM QKKGKWKAIS KVMGKRGCLV SPQQCEDKFN DLNKRYKRLT DILGRGTTCK 120 VVEKPELLEG MNISDKMKDD ARKILNSKHL FYEEMCSYHN NNRISLPEDP ELQHSLQLAL 180 MCKEEYDIRK RASGDADEDD HSADTDDEEE NDEEHLSMHV NKGAPTMQKR MRHTVDQEDI 240 GFGNSSSSHG YSRRSDPHSI TLDVSKSFPD GTNLALVQKD LAIQSAEIEK QRMQIEAEAL 300 ELAKQRLKWE QFSKKKDREL ENMRLENEQM KLENKCLELE RGVGACSAEV GPLASQRPP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNHDQLSEFQ FGEHGRADHH QHHDTKNSMS DDEDHGVNED ATGSHTGKVS YTGEDPGADL  60
GGGRRNCAMM QKKGKWKAIS KVMGKRGCLV SPQQCEDKFN DLNKRYKRLT DILGRGTTCK  120
VVEKPELLEG MNISDKMKDD ARKILNSKHL FYEEMCSYHN NNRISLPEDP ELQHSLQLAL  180
MCKEEYDIRK RASGDADEDD HSADTDDEEE NDEEHLSMHV NKGAPTMQKR MRHTVDQEDI  240
GFGNSSSSHG YSRRSDPHSI TLDVSKSFPD GTNLALVQKD LAIQSAEIEK QRMQIEAEAL  300
ELAKQRLKWE QFSKKKDREL ENMRLENEQM KLENKCLELE RGVGACSAEV GPLASQRPP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807496.1	0.0	uncharacterized protein LOC112885984
TrEMBL	A0A0A9QSA2	0.0	A0A0A9QSA2_ARUDO; Uncharacterized protein
STRING	Pavir.J39826.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-73	sequence-specific DNA binding transcription factors