PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g01530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 480aa    MW: 51550.6 Da    PI: 9.9435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g01530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.1e-16176207132
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                   C++Cg  +Tp+WR+gp g +tLCnaCG++ r 
  Zjn_sc00028.1.g01530.1.am.mk 176 CVQCGKEETPQWRSGPMGRSTLCNACGVRLRA 207
                                   ****************************9986 PP
2GATA50.33.3e-16305339135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +Cgtt+Tp+WR+gp g  tLCnaCG+++r  +l
  Zjn_sc00028.1.g01530.1.am.mk 305 CLHCGTTSTPQWREGPMGRHTLCNACGVRHRQGRL 339
                                   99*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-13170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.822170224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-12174226No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13174214IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.33E-11175225No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003202.7E-13176207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-14298356No hitNo description
SMARTSM004012.8E-17299353IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.732299335IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.43E-14304351No hitNo description
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
PfamPF003206.4E-14305339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
LTPGRVLSAR SPVAAAAAAF FPSQLIRPPS MATAEGGDGR ELAQPPRLGV PGPGTRRSTA  60
TGDMAVAVAP APAGCGEKEE ERQMEGPQQL YVLGLSVALP LAVAVARLDA GVPRKARTIR  120
PRAEPSDWWT FRMPVPLVKE GKNSPADGKR PVPPEAPRLD AAEQIVEKPA KRAKRCVQCG  180
KEETPQWRSG PMGRSTLCNA CGVRLRAAGA LRETEQRPPP ATPRKVAHPP PPPPESPASD  240
SSPDNPICER RAPIGDIYLV RKQPKSERWS PRKEAAPAPS PAVYLVKKKK PSKKPRKPRN  300
MGQRCLHCGT TSTPQWREGP MGRHTLCNAC GVRHRQGRLL PEYRPAASPT FVPSEHASRH  360
SEVLQLHRQR RTNTQPGLTG DSGDAPESDE DDKNNVVLLR RQPPEKDHCP PTSLHRPLPQ  420
PVDDDPRARG NNGLAVTPVA GCGGGDVVTD VPSSLDSQLL DVPSAPLIVD GDESLVASEP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713651e-55EU971365.1 Zea mays clone 363036 basic proline-rich protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.11e-113ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
TrEMBLA0A0A9D6L51e-154A0A0A9D6L5_ARUDO; Uncharacterized protein
STRINGPavir.J37525.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-27GATA transcription factor 9