PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g01490.1.cf-es.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 487aa    MW: 53138.1 Da    PI: 6.2543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g01490.1.cf-es.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.6e-07241262223
                                        EETTTTEEESSHHHHHHHHHHT CS
                            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                         C +Cgk F+r  nL+ H+r H
  Zjn_sc00028.1.g01490.1.cf-es.mkhc 241 FCAICGKGFKRDANLRMHMRGH 262
                                        6*******************98 PP
2zf-C2H2110.0013359373620
                                        TTEEESSHHHHHHHH CS
                            zf-C2H2   6 CgksFsrksnLkrHi 20 
                                        Cg+sFsrk+ L  H 
  Zjn_sc00028.1.g01490.1.cf-es.mkhc 359 CGTSFSRKDKLFAHV 373
                                        **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.35E-5239263No hitNo description
SMARTSM003550.012240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.448240267IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-5241291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
SMARTSM0035571289322IPR015880Zinc finger, C2H2-like
SMARTSM0035566327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDSNQNNNRG QSANLSSNPL YYQFGSDNPL HGIGMQQPFP PFTTPFGASS STNIMHMDWN  60
PVTMLDSLTF IEGKIQQVKD VIQTIVDNGG QLPCHAGDIA QQQQAVNAEL TYLIVQLIST  120
AGGILPSLKN SSFLSHPPAG GTDMSNYVGT SSSMVPSVAA ISELNKEKTC TSEDYDELFK  180
ELTDGAIERG IEIDDVLVEE QDTKDDNDGG DAGMDGENLA PGSYELLQPE KDEILAPHTH  240
FCAICGKGFK RDANLRMHMR GHGDQYKSPA ALAKPPRDAS AEHALVKRYS CPFVGCKRNK  300
LHKNFQPLKT ILCVKNHYKR SHCEKSHTCS RCHAKKFSVL ADLKTHEKHC GRDKWLCSCG  360
TSFSRKDKLF AHVALFQGHT PALPSEDPKA SSDQTELLGS QQEAAKLAGS TGSSFKWGGN  420
SFSDDSALDI KGLDSSSSDD FLSTANFGSF NFSFGQLDEF IGNPSENSFA ALSHSDHFQR  480
AQKKRGD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-141STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0A9JGB10.0A0A0A9JGB1_ARUDO; Uncharacterized protein
STRINGPavir.J02020.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-132C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]