PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00028.1.g01300.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 46964.5 Da PI: 9.89 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 114 | 161 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Zjn_sc00028.1.g01300.1.am.mk 114 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 161 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2.1e-17 | 167 | 211 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+l++++++ lG++ W+ Ia +++ gRt++++k++w+++ Zjn_sc00028.1.g01300.1.am.mk 167 RGNFTDEEDDLIIKLHQVLGNK-WSMIAGRLP-GRTDNEIKNYWNTH 211 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 105 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.526 | 109 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-13 | 113 | 163 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 113 | 208 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-15 | 114 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.42E-11 | 116 | 161 | No hit | No description |
PROSITE profile | PS51294 | 27.775 | 162 | 216 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 165 | 216 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 166 | 214 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 167 | 211 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 169 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MDRAVAVDCG ENNSSHGMAA ADIEGPRCAA YRMQVALACL RTCVTNRARA PSLDLARARE 60 GGELVAIGLI VNITQLTYHS SRPCRSSKKL RSGQPLMMET MGGSPCCEKA HTNKGAWTKE 120 EDQRLVAYIK AHGEGCWRSL PKAAGLQRCG KSCRLRWINY LRPDLKRGNF TDEEDDLIIK 180 LHQVLGNKWS MIAGRLPGRT DNEIKNYWNT HIKRKLLARG IDPKTHRPLS EAATAAASSS 240 THLQDHPARP SSSPETSCCA GQSGDEGSAS GSLPETSTQR QLASCIIDLN LSIGPPQHQP 300 SSSPPPPPTR PEAQAAGSST TATAAQPRHF FPLPPDACFL LPHARGTKSS RFQPPRSPSR 360 HTTVSCCFTP GHRPSCRRAT ICPSAMPLWP THPDPHRPVR PDPRLHVTAL REQLRALPVA 420 VPLPRWRAGP S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 114 | 216 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156905 | 1e-150 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). | |||
GenBank | EU963911 | 1e-150 | EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977235.1 | 8e-98 | myb-related protein Zm38 | ||||
TrEMBL | K3YEC2 | 2e-96 | K3YEC2_SETIT; Uncharacterized protein | ||||
STRING | Si012585m | 3e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-85 | myb domain protein 4 |