PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g00370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 312aa    MW: 33706.9 Da    PI: 8.1772
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g00370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.55.6e-3276129357
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                                   +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+
  Zjn_sc00028.1.g00370.1.am.mk  76 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 129
                                   68**************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.5E-2977129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2278128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-3078128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.68279128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.97E-19202274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-29206275IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-27213269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDFSGTQSEL PMPMGAGGPP YLGLQALHHA HEQQHNHGAN GRHMSPPQVE VEEEEDAKNR  60
QALAVVPVST GGGGGGVRYR ECLKNHAAAI GGSATDGCGE FMPAGEEGSL DALRCSACGC  120
HRNFHRKEPL GAGDGVPNRA LHHHHQLGLG GGPLHHPHPH HRGLLVAALP PAPTRMVMPL  180
SAAMHHPHHA TSAESDDARG CSHPPPPPGP PARKRFRTKF TAEQKARMLG FAEEAGWRLQ  240
KLEDAAVQRF CQEVGVKRRV LKVWMHNNKH TLARRHADDH HQPAGDDLPP PEPGRSPSRS  300
SPPPPQQQLR LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242142711875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443023.11e-123zinc-finger homeodomain protein 3
RefseqXP_021321592.11e-123zinc-finger homeodomain protein 3
SwissprotQ2QW441e-79ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLC5YTM11e-122C5YTM1_SORBI; Uncharacterized protein
STRINGSb08g006490.11e-122(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-58homeobox protein 31