PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g04860.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 661aa MW: 70874.3 Da PI: 10.2357

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g04860.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.9	7.9e-37	119	176	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGalrnvPvG+grrkn++ Zjn_sc00027.1.g04860.1.am.mk 119 EARLPCPRCRSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGALRNVPVGSGRRKNRA 176 56789***************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-30	121	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	122	176	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-28	123	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MRSLRHGFAP GLDRKGVTRT GTFWLDRFAR KRNESVMAST ENTHKLIGID RDMLSHIETP 60 CAGAAGIKLF GKVITTQPQQ PAHRSAALPA PPRQVPQASG RGSVGLLEEA ARARAAAAEA 120 RLPCPRCRSR DTKFCYFNNY NVNQPRHFCR ACHRYWTAGG ALRNVPVGSG RRKNRAMLPS 180 SAHVATATAS DDQGSGSSGS TPMFSTAPAG FFALYHDASS HITVPPAAYN AAGVTETTEL 240 WRWHVSSTAE RSGPMGQENA AASFCGSFGR VVATMMLGHM AANGRKGASK FEDSSSDSSM 300 PRPRYSTAPQ AASEVPQRPA PRLKAAAGSE STGGAPRRPV VKKPPVGGGG AGAGSRVVEL 360 EAKLEKAHGQ LTEMREQLTA AEKARKEARA ALVEAKKRLA AKKRDDLGAA ASAVQGGDGH 420 NKALAAVAAA VGYDEKAGMI ASDTDVLDAV VSSEPENNNV EPKAKNTTGR EVVDNVMSTD 480 DEKMWRQEVD ELSAKLMAKD REGRRGGQQR WGRRGGEAAA CCGGGDAVSR ERWGGGEASG 540 GRGLRWGQAW GREALNELSL ALEQVAPLLQ RESRRGMELQ RRRGALGQAE EGRGDLRGGA 600 LRMGVGLQRG GAEEDWSLEE WWRRRGRGER PCRCWSREEE RGSRLAESVE GDRLDPSGQE 660 V

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MRSLRHGFAP GLDRKGVTRT GTFWLDRFAR KRNESVMAST ENTHKLIGID RDMLSHIETP  60
CAGAAGIKLF GKVITTQPQQ PAHRSAALPA PPRQVPQASG RGSVGLLEEA ARARAAAAEA  120
RLPCPRCRSR DTKFCYFNNY NVNQPRHFCR ACHRYWTAGG ALRNVPVGSG RRKNRAMLPS  180
SAHVATATAS DDQGSGSSGS TPMFSTAPAG FFALYHDASS HITVPPAAYN AAGVTETTEL  240
WRWHVSSTAE RSGPMGQENA AASFCGSFGR VVATMMLGHM AANGRKGASK FEDSSSDSSM  300
PRPRYSTAPQ AASEVPQRPA PRLKAAAGSE STGGAPRRPV VKKPPVGGGG AGAGSRVVEL  360
EAKLEKAHGQ LTEMREQLTA AEKARKEARA ALVEAKKRLA AKKRDDLGAA ASAVQGGDGH  420
NKALAAVAAA VGYDEKAGMI ASDTDVLDAV VSSEPENNNV EPKAKNTTGR EVVDNVMSTD  480
DEKMWRQEVD ELSAKLMAKD REGRRGGQQR WGRRGGEAAA CCGGGDAVSR ERWGGGEASG  540
GRGLRWGQAW GREALNELSL ALEQVAPLLQ RESRRGMELQ RRRGALGQAE EGRGDLRGGA  600
LRMGVGLQRG GAEEDWSLEE WWRRRGRGER PCRCWSREEE RGSRLAESVE GDRLDPSGQE  660
V

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727006	1e-81	KJ727006.1 Zea mays clone pUT3982 C2C2-DOF transcription factor (DOF44) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10033	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	2e-31	Dof family protein