PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g04440.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 296aa MW: 33011.2 Da PI: 4.4241

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g04440.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.9	3.1e-07	219	250	14	45
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVk 45 +L e+F+ ++yps+ +e LA++lg+t rqVk Zjn_sc00027.1.g04440.1.sm.mkhc 219 RLLEHFKTEQYPSRVVKESLAEELGITSRQVK 250 68899**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-5	218	250	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-6	218	250	IPR009057	Homeodomain-like
CDD	cd00086	7.30E-5	218	250	No hit	No description
Pfam	PF00046	1.4E-4	219	250	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MPRCFAPGQV QIRHLLNLNL YRPQYNHLLK EERGVDPRRE ARGKGAGLQR GSDLSIEDSW 60 EKVFPEAAAL SNGSKQDDTF NLPSDDSEDG DFDPDMTEGQ MASKEDGSSE EGEDGSSEED 120 EDEGSDSDDS NFLTSSDDSE AVTDKKKVDD LGLPSEDSED DDYDPAGPGS DKDIQKEKSA 180 MKKNGLEMAH QKRAAKNQVM LKPIYLQGKA LELGLRPKRL LEHFKTEQYP SRVVKESLAE 240 ELGITSRQVK DSEDMVMDKP DVCSKETENE DAKCDETRKK AVQRELKKKK MGSGRS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP32085	4	4