PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g04190.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 664aa MW: 70902 Da PI: 9.623

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g04190.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.3	1.8e-17	454	488	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Zjn_sc00027.1.g04190.1.am.mk 454 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 488 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.3E-18	448	498	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.453	448	484	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.3E-15	449	485	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.99E-15	450	511	No hit	No description
CDD	cd00202	6.18E-13	453	500	No hit	No description
PROSITE pattern	PS00344	0	454	479	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.7E-15	454	488	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MVSVFGTAHP MSRTKSPPKA VPNSIYMLAQ IIEQAMRLHT LPPRFDAAWR GVAWRERPSG 60 ARRAARAYGA EDGAARPDTR REAGRRHAAL GAAIQWQPSR HRTDGERSAA GSPTWWLRGR 120 TRGPRDVRIF QGGLPAKSTW LDPRSRWIAP ARKDESFISA DCAPSSSSVL LHSALQRLRR 180 KNQPREGEEE IDEFFAVNGG DGRVQERCCP GEEGCRPLPR RRPPRPAMRR RRXXXEEEEE 240 EVVVEGEDTK AGVVSAAAHG DGEEGAAGNA SNESSTVTAL DSCSNSLSGL ADGGFSGGLC 300 EPYDQLAELE WLSNYMGEDN FPTEDLRKLE LITGVPQAGT AATKASASTP APAPAQPCGG 360 VLPPEAAVPA KARSKRSRIA PFSWSSPLVV PPPPPASPPS PASAAISPSE SGTGGTPAFS 420 AKKPAKASKK KDSPTPPPAP TATAAAPAGE GRRCLHCETD KTPQWRTGPM GPKTLCNACG 480 VRYKSGRLVP EYRPAASPTF VVSKHSNSHR KVLELRRQKE VHQGGQAMPH PHPHHQHQSH 540 HAHVGTGVGG GGLIHMPSPL LFDGPSAPLL TEDFLLHNSS GTDVAGTALD PISNHLAVKT 600 LVRLCWIDSP ATTSFGPISG TVAWLTLALV LVRGVAAGDN VTCEEPGHGM HGSRPTRRRR 660 VDFA

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MVSVFGTAHP MSRTKSPPKA VPNSIYMLAQ IIEQAMRLHT LPPRFDAAWR GVAWRERPSG  60
ARRAARAYGA EDGAARPDTR REAGRRHAAL GAAIQWQPSR HRTDGERSAA GSPTWWLRGR  120
TRGPRDVRIF QGGLPAKSTW LDPRSRWIAP ARKDESFISA DCAPSSSSVL LHSALQRLRR  180
KNQPREGEEE IDEFFAVNGG DGRVQERCCP GEEGCRPLPR RRPPRPAMRR RRXXXEEEEE  240
EVVVEGEDTK AGVVSAAAHG DGEEGAAGNA SNESSTVTAL DSCSNSLSGL ADGGFSGGLC  300
EPYDQLAELE WLSNYMGEDN FPTEDLRKLE LITGVPQAGT AATKASASTP APAPAQPCGG  360
VLPPEAAVPA KARSKRSRIA PFSWSSPLVV PPPPPASPPS PASAAISPSE SGTGGTPAFS  420
AKKPAKASKK KDSPTPPPAP TATAAAPAGE GRRCLHCETD KTPQWRTGPM GPKTLCNACG  480
VRYKSGRLVP EYRPAASPTF VVSKHSNSHR KVLELRRQKE VHQGGQAMPH PHPHHQHQSH  540
HAHVGTGVGG GGLIHMPSPL LFDGPSAPLL TEDFLLHNSS GTDVAGTALD PISNHLAVKT  600
LVRLCWIDSP ATTSFGPISG TVAWLTLALV LVRGVAAGDN VTCEEPGHGM HGSRPTRRRR  660
VDFA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3025	31	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	4e-41	GATA transcription factor 12