PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00027.1.g02990.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 34320.2 Da PI: 5.3594 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 16 | 50 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 +g W++eEde+l++ + + G g+W+++++ g + t Zjn_sc00027.1.g02990.1.am.mk 16 KGLWSPEEDEKLYNHIIRRGVGCWSSVPKLAG-KHT 50 678***************************99.655 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ Zjn_sc00027.1.g02990.1.am.mk 80 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 123 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.422 | 11 | 58 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 11 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-20 | 13 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5 | 15 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-5 | 16 | 50 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.408 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-26 | 78 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.45E-12 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRLSGGVGV QPKLRKGLWS PEEDEKLYNH IIRRGVGCWS SVPKLAGKHT HAHSPAGTLF 60 YRSLPRTLRW INYLRPDLKR GSFSQQEEDL IVALHEILGN RWSQIASHLP GRTDNEIKNF 120 WNSCVKKKLR QRGIDPSTHK PIAGGAGAAE AAAAALPDQD QDHKPAAEGA AAPKQQVALD 180 PFPVMTDFGG CGFDQLGVAN VAALYGQFDY DVGKASDAAA GFVADYSSVL DVSENLGYGE 240 SSSNSSNWNC AEIGSVLDSE VLDWASGAGV KAEPFTEMVR QHSGGGEVDD DALEHTFALP 300 AGCQEQSLAH FDFNLEYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 12 | 129 | 3 | 108 | B-MYB |
1h8a_C | 5e-21 | 10 | 129 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063597 | 5e-94 | BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds. | |||
GenBank | KJ727494 | 5e-94 | KJ727494.1 Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961344.1 | 1e-142 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-111 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | K3Z860 | 1e-141 | K3Z860_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J19191.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-60 | myb domain protein 86 |