PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g01890.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 336aa MW: 36465.2 Da PI: 10.6271

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g01890.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.8	3.3e-14	32	118	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 +W++ e+ aL+ a ++ +++rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ Zjn_sc00027.1.g01890.1.am.mk 32 CWSDGETAALVSAWGSRYIEVNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP---- 108 7***************************************999999999********************97.... PP trihelix 75 ssstcpyfdqle 86 s +++f++l+ Zjn_sc00027.1.g01890.1.am.mk 109 --SGWSFFQELH 118 ..4799*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-25	30	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAMAAAAAAA ASGGGGCKLP PPNPNLPYRE DCWSDGETAA LVSAWGSRYI EVNRGNLRQK 60 QWQEVADAVN SRRGASARRR PPRTDVQCKN RVDTLKKKYK AERARNAPSG WSFFQELHHL 120 VGPTLDASAS KRPSPSPSPQ FALPFHPPPI RKPPSPSLSP SPPPPMALPL PNYRRGSPLP 180 AAALIQQEAA AAAAAMSDSG DSSDAGGKNN YNSQQSPLRS MSALSGHKEK RNRHETGSSS 240 DKAFRELARA IDAFAEMYER VENAKQNHAL EMERQRINFL KQLEVKRMEN FVDAHVKLMR 300 AKRTKKISGT AADGAAGVEL VATIAAQPFF STSTLH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440242.1	1e-146	trihelix transcription factor ASIL2
TrEMBL	A0A0A9IAS8	1e-150	A0A0A9IAS8_ARUDO; Uncharacterized protein
STRING	Sb09g028350.1	1e-146	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-28	sequence-specific DNA binding transcription factors