PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g01670.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 519aa MW: 54060.6 Da PI: 8.7871

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g01670.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.4e-06	18	33	41	56
HHHHHHHHHHHHHHHH CS Homeobox 41 erqVkvWFqNrRakek 56 +++V++WFqNr+ + k Zjn_sc00027.1.g01670.1.am.mk 18 DANVFYWFQNRKSRTK 33 79************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MLIRSLVTST GEYGPVGDAN VFYWFQNRKS RTKHKLRAAG LLQPASGSAG LARAAGLARA 60 CASTMPAPAP VTPPRHLLPA PVAPTSSSSS SSDRSSRSSS KSVKPAVALP SSPAAAIQQV 120 GFLPAPAMDF LKQTPPVPCL AARQLYYHSQ IAAPTVPLTP ELITSPDPPL LQWQQSQYLP 180 ATELGGLLGA QYAPAPVTVH SPVSPNVLLG LGNEILGQDC VNVSSSSKGL LGHDQYWNNT 240 GTELSSKTDA LSAVIRDDER ARLGSLHHDF GVTTTTAAGD PLHAAADAAG TAAMLPSAAA 300 APINVAAATT SVDLTDQLQG LLDFGLIGRK APPPMATLVA VARGAVTTCA STMQFSVPAT 360 RLDVRQFGEA AVLLRHPGEP VLVDESGVTV EPLQQDGLYY VLVKISLQFI GLFREQAALL 420 RRPAGHAVRT EPPFRPSPSI GQTNGIVPHP PASPVSALPF VFSIARTADA QGVAIHRLHD 480 HESTTLACAV TAGHEGDGRV GAPRPHPSPI CPRTRRAIS

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MLIRSLVTST GEYGPVGDAN VFYWFQNRKS RTKHKLRAAG LLQPASGSAG LARAAGLARA  60
CASTMPAPAP VTPPRHLLPA PVAPTSSSSS SSDRSSRSSS KSVKPAVALP SSPAAAIQQV  120
GFLPAPAMDF LKQTPPVPCL AARQLYYHSQ IAAPTVPLTP ELITSPDPPL LQWQQSQYLP  180
ATELGGLLGA QYAPAPVTVH SPVSPNVLLG LGNEILGQDC VNVSSSSKGL LGHDQYWNNT  240
GTELSSKTDA LSAVIRDDER ARLGSLHHDF GVTTTTAAGD PLHAAADAAG TAAMLPSAAA  300
APINVAAATT SVDLTDQLQG LLDFGLIGRK APPPMATLVA VARGAVTTCA STMQFSVPAT  360
RLDVRQFGEA AVLLRHPGEP VLVDESGVTV EPLQQDGLYY VLVKISLQFI GLFREQAALL  420
RRPAGHAVRT EPPFRPSPSI GQTNGIVPHP PASPVSALPF VFSIARTADA QGVAIHRLHD  480
HESTTLACAV TAGHEGDGRV GAPRPHPSPI CPRTRRAIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM490242	1e-34	AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961209.1	1e-124	WUSCHEL-related homeobox 12
Swissprot	A3B6V0	2e-78	WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBL	K3ZEL7	1e-122	K3ZEL7_SETIT; Uncharacterized protein
STRING	Si025013m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-11	homeobox-3

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]