PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g01480.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 211aa    MW: 21508.2 Da    PI: 8.7533
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g01480.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.26.3e-2086120135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC t++TplWR+gp+g+k+LCnaCG++y+k+++
  Zjn_sc00027.1.g01480.1.am.mk  86 CANCDTSSTPLWRNGPRGPKSLCNACGIRYKKEER 120
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-1980132IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.5180116IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-1382122No hitNo description
Gene3DG3DSA:3.30.50.103.1E-1784120IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.52E-1285117No hitNo description
PROSITE patternPS00344086111IPR000679Zinc finger, GATA-type
PfamPF003201.0E-1786120IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLQERAPCAC GMRYAGGDCG GRCGGPAFSL MFPVTAGGGQ LGYGGGPVDC TLSLGTPSTR  60
RAEAGAHAKA GGGSAVASCK EPARRCANCD TSSTPLWRNG PRGPKSLCNA CGIRYKKEER  120
RAAAALAPAP TQCHGSLGPG SYACGAYARQ HQPPPQWGCY GSAAGTTKSA SFAAYGDSAA  180
ADGPCLSWML NGVPSSPAFA VRERPSLFQY Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.17e-64GATA transcription factor 15
SwissprotQ6QPM21e-25GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A1E5WAB74e-73A0A1E5WAB7_9POAL; Uncharacterized protein
STRINGSi024214m3e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-25GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]