PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00027.1.g00770.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 181aa MW: 19762.5 Da PI: 10.8987 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 14 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W+ Iar +g g+++++c+ ++ Zjn_sc00027.1.g00770.1.am.mk 14 QWTPRQNKLFEQALAVYEKDtpdRWSNIARAVGGGKSAEDCRRYY 58 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.838 | 10 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-8 | 11 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-7 | 13 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-11 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.08E-7 | 15 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASLSMTKNS ARAQWTPRQN KLFEQALAVY EKDTPDRWSN IARAVGGGKS AEDCRRYYEL 60 LEEDVKHIES GKVPFPAIIW AACEPKAAQT HSPTTLAINA AKFRVPRRPL AVFPRGLRPP 120 THRRRTLPPL SVTALAASAS AFALRTGTSS DAAANNPEPS KHLAEPNQHL AGGPPLPRPT 180 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-24 | 4 | 76 | 1 | 71 | RADIALIS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184921 | 1e-75 | KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-25 | RAD-like 6 |