PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g00320.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 231aa MW: 24517.3 Da PI: 9.9834

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g00320.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.9e-13	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qk+ Zjn_sc00027.1.g00320.1.am.mkhc 98 PWSEEEHRLFLVGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 142 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.383	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	7.72E-17	93	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-17	94	146	IPR006447	Myb domain, plants
SMART	SM00717	9.0E-10	95	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-10	95	138	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-10	98	141	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-9	98	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MHNVATRRRC SHCGSYGHTS RAYCRRGGTA GLRLFGVQLH AGSSSPALNF PLHESCSVDC 60 LTPQGSPSCA LLLSSSMDDE GGRGGSTAAF RERKKGVPWS EEEHRLFLVG LEKLGRGDWR 120 GISRGFVTTR TPTQVASHAQ KFFLRQNSAG KQNGKRRSSL FDMDCGTNGA SGGVSDDLSS 180 VCKESTSASL LSPARRPSST ETPASVRRAS YAISDVGVGA SSRISSFAAE P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184673	8e-80	KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961036.3	1e-55	transcription factor SRM1
Swissprot	Q7XC57	2e-41	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A059Q1B4	4e-55	A0A059Q1B4_9POAL; Transcription factor
TrEMBL	A0A368QE50	2e-54	A0A368QE50_SETIT; Uncharacterized protein
STRING	Pavir.J35324.1.p	3e-58	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-42	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]