PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g00120.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 400aa MW: 43176.3 Da PI: 7.8737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g00120.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	1.9e-29	92	195	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C ++C ++p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +P+yG+ Zjn_sc00027.1.g00120.1.am.mk 92 SCNGCRVLRKGCGDSCSIRPCLqwiksPDAQSNATVFLAKFYGRAGLLSLVNAAPQHLRPAVFRSLLYEACGRIVNPIYGS 172 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 vg++++++++++q+++e++l ++ Zjn_sc00027.1.g00120.1.am.mk 173 VGLLWSGNWNMCQAAVEAVLKGA 195 ***************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.369	91	197	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-23	92	190	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MARGAKNENQ QPPAPGFRQG FPGFLGRKPA RIQNRGRECG IGFRFHWKSC YSIRCRFLGQ 60 LVSGKTSDAA ATQRSHLRIS LLGVGEENMR LSCNGCRVLR KGCGDSCSIR PCLQWIKSPD 120 AQSNATVFLA KFYGRAGLLS LVNAAPQHLR PAVFRSLLYE ACGRIVNPIY GSVGLLWSGN 180 WNMCQAAVEA VLKGAPIVKI SSDEAAADTP SPAHLHKAAY DIRHVAASSS SDKPGRLKKR 240 TSASSAAAAA AATTTTACSN KKSKKAAPDD DHQQQEVSAA SDHHHLHVVE PMDSDDAEAA 300 GSHVSQAEQS THSEREAEQS IHNEREAEQS IHNERESEQS THDEQQVEEK PQEQMGLDLT 360 LGFVPIPAQC VPRPAPDAGD AGCSITGTGW TAHDPAFRFL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MARGAKNENQ QPPAPGFRQG FPGFLGRKPA RIQNRGRECG IGFRFHWKSC YSIRCRFLGQ  60
LVSGKTSDAA ATQRSHLRIS LLGVGEENMR LSCNGCRVLR KGCGDSCSIR PCLQWIKSPD  120
AQSNATVFLA KFYGRAGLLS LVNAAPQHLR PAVFRSLLYE ACGRIVNPIY GSVGLLWSGN  180
WNMCQAAVEA VLKGAPIVKI SSDEAAADTP SPAHLHKAAY DIRHVAASSS SDKPGRLKKR  240
TSASSAAAAA AATTTTACSN KKSKKAAPDD DHQQQEVSAA SDHHHLHVVE PMDSDDAEAA  300
GSHVSQAEQS THSEREAEQS IHNEREAEQS IHNERESEQS THDEQQVEEK PQEQMGLDLT  360
LGFVPIPAQC VPRPAPDAGD AGCSITGTGW TAHDPAFRFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568012.1	4e-84	LOB domain-containing protein 41
TrEMBL	F2DDE6	7e-85	F2DDE6_HORVV; Predicted protein
STRING	MLOC_58304.1	1e-85	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-71	LOB domain-containing protein 41