PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g00020.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 329aa    MW: 36304.6 Da    PI: 4.5529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g00020.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011306326222
                                     EETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                     +C+ C+k+F++ + L+ H + 
  Zjn_sc00027.1.g00020.1.am.mkhc 306 SCNSCSKTFNSEMALQDHKKA 326
                                     7*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.78E-5299329No hitNo description
PROSITE profilePS5015710.554305329IPR007087Zinc finger, C2H2
PROSITE patternPS000280307329IPR007087Zinc finger, C2H2
PfamPF128743.1E-4307329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEFWGLEVKP GMAVKCVPGD DYILHLSQAA LGESKKANDN AIMYVKVDDQ KLAIGTLSAD  60
KYPQIQFDLV FEKEFELSHT SKAASVFFSG YKVLQPVEGD EYPSYFWINS FMMFVVLTCS  120
LLSICFLDLL SSLVPQWILI LKKMKIIFVI SDEEEEEEIN NPVVMKNGKA QGKEEAKVGR  180
PSAAVSKANA VALDVEKKRN NDDSDEDETD DDDDLSSEEE EDGSSDEDDS SKDDESDEDD  240
EEETPKKPEA GKKRVAENAL KTPASDKKAK VATLSGQKTG SKNTHVATPH PAKHSSKTPK  300
SGGSMSCNSC SKTFNSEMAL QDHKKAKKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441441.19e-85histone deacetylase HDT2
TrEMBLC5YUI22e-83C5YUI2_SORBI; Uncharacterized protein
STRINGPavir.J01431.1.p8e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-26histone deacetylase 2C