PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g04020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 582aa    MW: 60978.3 Da    PI: 5.2725
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g04020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-12285338155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d    +  +r  + + g+ gt+eeAa+a++ a+ k++g
  Zjn_sc00026.1.g04020.1.am.mk 285 SIYRGVTRHRWTGRYEAHLWD----NscRReGQSRKGRQGTEEEAAEAYDIAAIKFRG 338
                                   57****************999....33444677788999****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-12285348IPR016177DNA-binding domain
CDDcd000187.62E-17285348No hitNo description
PfamPF008472.1E-8285338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-11286347IPR001471AP2/ERF domain
PROSITE profilePS5103216.674286346IPR001471AP2/ERF domain
SMARTSM003801.1E-21286352IPR001471AP2/ERF domain
PRINTSPR003672.7E-6287298IPR001471AP2/ERF domain
PRINTSPR003672.7E-6328348IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENAQP NQDTSSAIDI SGGSDFYGLP AQQASDGHIG VDHASYGIME  60
AFNRGPQETQ GEETAARQPL YRLMICNWNL RGMDYNGGAS ELSMLVGSSG GGGSGKRAVE  120
ESEPKLEDFL GGNSFVSEQD QSGGYLFSGI PMASSTNSNS GSNTMELSMI KTWLRNNQVP  180
QPQPPAPHQP QPEEMSTDAS ANSFGCSDSQ GRNGTVATGS SQSLALSMST GSHLPMVVGG  240
GTASGAASES TSSENKRANG AMDSPGGAVE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQSRKGRQG TEEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSILESST  360
LPVGGAARRL KDAVDHPEAG ATIWRAGMDG GVISQLTDAG LGSYASYHHH GWPTIAFQQP  420
SPLSVHYPYG QPSRGWCKPE QDAAVAAAAH SLQDLQQIHL GSTAHNFFQA SSSSTVYNGG  480
GATGYQGLGG SSFLMPSSTV VADQGHSSTA NQGSTCNYGD EEGRLISYDA MVASAGGDPY  540
AAARGGYQFS TSQGSAASTV SIARANGYAN NWSSSFNANG MG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824550.11e-173AP2-like ethylene-responsive transcription factor BBM1 isoform X1
RefseqXP_025824559.11e-173AP2-like ethylene-responsive transcription factor BBM1 isoform X2
TrEMBLA0A3L6QGM90.0A0A3L6QGM9_PANMI; Protein BABY BOOM 1
STRINGGRMZM2G366434_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-32AP2 family protein