PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g02530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 679aa    MW: 74267.5 Da    PI: 10.6292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g02530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-1655100147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zjn_sc00026.1.g02530.1.am.mk  55 RGHWRPAEDARLKELVAQFGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 100
                                   899*****************************.***********996 PP
2Myb_DNA-binding569.4e-18107151147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zjn_sc00026.1.g02530.1.am.mk 107 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 151
                                   678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14250101IPR017930Myb domain
SMARTSM007171.9E-1354103IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-2755148IPR009057Homeodomain-like
PfamPF002492.9E-1555100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2556108IPR009057Homeodomain-like
CDDcd001674.49E-125899No hitNo description
PROSITE profilePS5129427.25102156IPR017930Myb domain
SMARTSM007178.8E-16106154IPR001005SANT/Myb domain
PfamPF002491.0E-14107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-20109154IPR009057Homeodomain-like
CDDcd001672.52E-7118152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAPEMVGFYG PVPPAPFQEE REQQVVVDAE DVYDVEDGGA GHGHGGGGQG KLCSRGHWRP  60
AEDARLKELV AQFGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRRAF SEEEEERLLA  120
AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREHA GSLRRRKPAF SSSSSSPTPA  180
PPTHYAPVVV LHHHHYGSPP PLPFHAAQHG GAQEAYSGGG GGDSDESAST CTTDLSLGSS  240
APVPCFYQIL GRYDMVPRAA APAPSAFTPS PRSAFSAPSL SRHREPAFPA GGDKPALPFF  300
DFFGVGARFA SAAVAWGGRR NQHEGRQRAS KNKPPRASRD GVMDLASHGT AAALPSKPTK  360
LFPRPRWLRT NALREQRADH AGRAGAAAAP SPTTENPDAI QFGLFLFVLE RAMKWSCSTT  420
HQSAGARTES GSMTATTRRL MEKGFFYLLK PESLPHWKCF GALRPWNFSC VHRRRRGEDN  480
ADGRRNTARG RRRRRTHDRL VLLPAALAAA LPRIHFRSMH TRACADRSRP YVRAWTGARD  540
RTTPPGPQGR VQLVIIGDRE LRGSERWIER PACLAPGGTA QRSTSRASTH ISCNEMRISC  600
HGQASCSFDQ QGSHACPACA RLSPEDLMVV LAGGDRAGST GAGGRYTTPS SRQAVAFQAF  660
HCVTHAHVKI DLYAPSQAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30551557107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473494RRRGEDNADGRRNTARGRRRRR
2490495RRRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648551e-141EU964855.1 Zea mays clone 282116 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-51myb domain protein 105