PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00026.1.g02530.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 679aa MW: 74267.5 Da PI: 10.6292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 55 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Zjn_sc00026.1.g02530.1.am.mk 55 RGHWRPAEDARLKELVAQFGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 100 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 107 | 151 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Zjn_sc00026.1.g02530.1.am.mk 107 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 151 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.142 | 50 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 54 | 103 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-27 | 55 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-15 | 55 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 56 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-12 | 58 | 99 | No hit | No description |
PROSITE profile | PS51294 | 27.25 | 102 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-16 | 106 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 109 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-7 | 118 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MAPEMVGFYG PVPPAPFQEE REQQVVVDAE DVYDVEDGGA GHGHGGGGQG KLCSRGHWRP 60 AEDARLKELV AQFGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRRAF SEEEEERLLA 120 AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREHA GSLRRRKPAF SSSSSSPTPA 180 PPTHYAPVVV LHHHHYGSPP PLPFHAAQHG GAQEAYSGGG GGDSDESAST CTTDLSLGSS 240 APVPCFYQIL GRYDMVPRAA APAPSAFTPS PRSAFSAPSL SRHREPAFPA GGDKPALPFF 300 DFFGVGARFA SAAVAWGGRR NQHEGRQRAS KNKPPRASRD GVMDLASHGT AAALPSKPTK 360 LFPRPRWLRT NALREQRADH AGRAGAAAAP SPTTENPDAI QFGLFLFVLE RAMKWSCSTT 420 HQSAGARTES GSMTATTRRL MEKGFFYLLK PESLPHWKCF GALRPWNFSC VHRRRRGEDN 480 ADGRRNTARG RRRRRTHDRL VLLPAALAAA LPRIHFRSMH TRACADRSRP YVRAWTGARD 540 RTTPPGPQGR VQLVIIGDRE LRGSERWIER PACLAPGGTA QRSTSRASTH ISCNEMRISC 600 HGQASCSFDQ QGSHACPACA RLSPEDLMVV LAGGDRAGST GAGGRYTTPS SRQAVAFQAF 660 HCVTHAHVKI DLYAPSQAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 55 | 155 | 7 | 107 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 473 | 494 | RRRGEDNADGRRNTARGRRRRR |
2 | 490 | 495 | RRRRRT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 1e-141 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-51 | myb domain protein 105 |