PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00026.1.g02510.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 492aa MW: 52563.2 Da PI: 10.6286 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 40 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++ Zjn_sc00026.1.g02510.1.am.mk 40 RSHWRPAEDARLKDLVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 85 678*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.9e-15 | 92 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++ +E+ +l a++ +G++ W++Iar ++ gRt++ +k++w+ + Zjn_sc00026.1.g02510.1.am.mk 92 RRAFSSDEETRLMAAHRAYGSK-WALIARLFP-GRTDNAVKNHWHVL 136 6789******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.009 | 35 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-13 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 40 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.98E-26 | 40 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 42 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-12 | 43 | 84 | No hit | No description |
PROSITE profile | PS51294 | 17.12 | 91 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-10 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 92 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 94 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 94 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MAAGSFGPAP PAAGEQVVVA GDGCEVEQGR GGQGKKLCAR SHWRPAEDAR LKDLVAQHGP 60 QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI TRRAFSSDEE TRLMAAHRAY GSKWALIARL 120 FPGRTDNAVK NHWHVLTARR KREQSGSLRR RKSTTSSSPL STPAPVIPSH HGPPPVVLRQ 180 HHYPSPHGVL HEAAVYSGDS DESASTCTTD LSLGPAFSAL SPARHHQTLP SDDCGGKSAP 240 PFFDFLGVGA TSSGSTSPGG GEGLRIKNQR SRTTTHISFE TRATPGVVSA ASVRATRTMI 300 SPTLSWLTCL GIRRWVSERS STAMPLGNQA GQCVGGGVAG NVDGLEAVGI EVNCYALLAP 360 RVAHEGPHYP RREPKRSREH RCRAGENKAT HGREAAKSNE RAFTGLPFTH ARTGLAELRV 420 VSGHTVTHSV TGAGCSGLQV HCSRFSIIAG GRETAALLAP SFPLRQLFAF HPSVHGFPPS 480 PTWPATGLAG FI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-27 | 43 | 141 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 43 | 141 | 7 | 104 | C-Myb DNA-Binding Domain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 150 | RRKREQSGSLRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 1e-116 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 2e-62 | myb domain protein 56 |