PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g01710.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10477.1 Da    PI: 10.1516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g01710.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.51.5e-324393151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  Zjn_sc00026.1.g01710.1.sm.mk 43 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 93
                                  79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-413594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4733595IPR002100Transcription factor, MADS-box
CDDcd002652.54E-413693No hitNo description
SuperFamilySSF554553.92E-303694IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-343757IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003791IPR002100Transcription factor, MADS-box
PfamPF003191.0E-274491IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-345772IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-347293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MLNMMSDLSC GPSAKGKEQP APANSGPSAG MSEKLGRGKI EIKRIENSTN RQVTFCKRRN  60
GLLKKAYELS VLCDAEVALI VFSSRGRLYE YANHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-223593159Myocyte-specific enhancer factor 2B
1tqe_Q8e-223593159Myocyte-specific enhancer factor 2B
1tqe_R8e-223593159Myocyte-specific enhancer factor 2B
1tqe_S8e-223593159Myocyte-specific enhancer factor 2B
6c9l_A8e-223593159Myocyte-specific enhancer factor 2B
6c9l_B8e-223593159Myocyte-specific enhancer factor 2B
6c9l_C8e-223593159Myocyte-specific enhancer factor 2B
6c9l_D8e-223593159Myocyte-specific enhancer factor 2B
6c9l_E8e-223593159Myocyte-specific enhancer factor 2B
6c9l_F8e-223593159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306372e-63AJ430637.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m23 gene).
GenBankEU9608102e-63EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654205.11e-46AGAMOUS-like protein isoform X1
SwissprotP293813e-36AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A0A8XZ731e-50A0A0A8XZ73_ARUDO; Uncharacterized protein
TrEMBLA0A0A9TLG61e-50A0A0A9TLG6_ARUDO; Uncharacterized protein
STRINGGRMZM2G359952_P015e-46(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.22e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]