PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g00220.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 465aa    MW: 52996.4 Da    PI: 5.1161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g00220.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-161341973398
                                     -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     +++l+ +d++  +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+v+r
  Zjn_sc00026.1.g00220.1.am.mkhc 134 TQELITKDLHESEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLTAGDAFVYL--RSETGEQRVGVRR 197
                                     458999******************************************999..4477778999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.8E-4116199IPR003340B3 DNA binding domain
SuperFamilySSF1019361.03E-19123222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-20127212IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-9131197No hitNo description
PfamPF023627.7E-14132197IPR003340B3 DNA binding domain
PROSITE profilePS508639.728136199IPR003340B3 DNA binding domain
PfamPF023091.3E-6362402IPR033389AUX/IAA domain
PROSITE profilePS5174517.37365448IPR000270PB1 domain
SuperFamilySSF542778.14E-6367441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAQARDLELF AELWRACAGP LVELPQRDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV  60
PNKILCKVVN VELKVNSWIT LALFNLLLQS RFLNYYTSTS ILVSAAQAET ETDEMFAQIT  120
LQPDPDDMSM PTPTQELITK DLHESEWRFK HIYRGQPRRH LLTTGWSTFV TSKKLTAGDA  180
FVYLRSETGE QRVGVRRLVQ KKSTMPASVI SSQSMRLGVK PKPIHCQPEQ LIKEILLLNG  240
KVLNGRHLRT CSRVLALWEW EGSAAGEDST EARVAPWPGF SAYQAEEPSS KLSCNTALCS  300
YRTDEVTPDF TNAVEEKKEP VLLRLFGVDM INHIKNAAST DNIPIGAGEK LTRADCSYED  360
SGRLSAFSKV QMHGNAVGRS VDLANFDRYE QLIGELEHMF EIKELNSKEK WKVAFTDDDG  420
ATIEIEDNRP WLEFRQVVKK IVIYPIEDWR KVEPAPEEED LKTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-57922519252Auxin response factor 1
4ldw_A1e-57922519252Auxin response factor 1
4ldw_B1e-57922519252Auxin response factor 1
4ldx_A1e-57922519252Auxin response factor 1
4ldx_B1e-57922519252Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9654021e-98EU965402.1 Zea mays clone 285807 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816439.11e-104auxin response factor 1-like
SwissprotQ5NB851e-99ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2S3HZC81e-102A0A2S3HZC8_9POAL; Auxin response factor
TrEMBLA0A2T7DTH31e-102A0A2T7DTH3_9POAL; Auxin response factor
STRINGSi000540m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.18e-66auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]