PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g00100.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 362aa    MW: 39857.2 Da    PI: 9.8799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g00100.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.2e-064769123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++Cgk F r  nL+ H r H
  Zjn_sc00026.1.g00100.1.sm.mk 47 FVCEICGKGFQRDQNLQLHRRGH 69
                                  89*******************88 PP
2zf-C2H213.90.00016123145123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zjn_sc00026.1.g00100.1.sm.mk 123 WKCDKCNKRYAVQSDWKAHSKTC 145
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-74669No hitNo description
PROSITE profilePS5015711.6144769IPR007087Zinc finger, C2H2
SMARTSM003550.0124769IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-64769IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035525088118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-5111144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-7118143No hitNo description
SMARTSM00355110123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLNRALELAP PAKRKRNLPG TPGKSSCYPD AEVIALSPRT LLATNRFVCE ICGKGFQRDQ  60
NLQLHRRGHN LPWKLRQRSG KEPRKRVYVC PEKTCVHHNP SRALGDLTGI KKHFCRKHGE  120
KKWKCDKCNK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFVTHRAF CDALAEETAR  180
LNNQRQNHHP YLLAAASSST TPPASISLMP SMGHIANVLA GAGEPTVPSP QLPLTTWQFD  240
STSSLQQLGW LYDGNNNGRK LSISKDVPSL FSSQQHANPA APAPDMSATA LLLKATQIGA  300
VTSSVVGTCF EPSGASSHRQ QNSRLGNVPF DDVLSAVRHA GLEQLDAVGR EETRDFLGVE  360
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35119188372Zinc finger protein JACKDAW
5b3h_F2e-35119188372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.11e-148zinc finger protein MAGPIE-like
RefseqXP_025818707.11e-148zinc finger protein MAGPIE-like
SwissprotQ9FFH31e-112IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A1E5VAN51e-150A0A1E5VAN5_9POAL; Zinc finger protein MAGPIE
STRINGOS01T0242200-011e-145(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]