PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00025.1.g03620.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 33329.4 Da PI: 6.1787 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.4e-07 | 36 | 80 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT eE + + +a + + +W+++a+ ++ gRt ++ s++ Zjn_sc00025.1.g03620.1.sm.mk 36 GVWTLEENKMFERALANVDWDapdRWERVASFLP-GRTVADVASHF 80 78****************99999***********.**********8 PP | |||||||
2 | Myb_DNA-binding | 43.4 | 7.7e-14 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Zjn_sc00025.1.g03620.1.sm.mk 147 PWTEEEHKLFLIGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 191 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.1E-5 | 34 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 35 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.272 | 36 | 84 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.1E-5 | 36 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-10 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-5 | 38 | 80 | No hit | No description |
PROSITE profile | PS51294 | 18.329 | 140 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-17 | 142 | 196 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-17 | 143 | 194 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 144 | 190 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 144 | 194 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-11 | 147 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-10 | 147 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMKESWMEVL PPPPAAPYFA GQAGGWLLQD RMAGGGVWTL EENKMFERAL ANVDWDAPDR 60 WERVASFLPG RTVADVASHF DDLENDVYFI EAGLVPLPHY GAGGGGSQSA EFTFDWDAGD 120 LGFKRSCYVV GGKRGRGPDQ ERKKGVPWTE EEHKLFLIGL KKYGRGDWRN ISRNFVTSRT 180 PTQVASHAQK YFIRLNSGGK DKRRSSIHDI TTVNLPDEDS SNPSPSPPSV VAATSTPSSG 240 GPAMSEQFGV LVDSKPAPPP MGQQQHHFLP HPYDNVKLEP HHGGIFDDSV LMQMQCGQLQ 300 PLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-16 | 35 | 114 | 8 | 87 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054281 | 1e-178 | BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds. | |||
GenBank | BT055802 | 1e-178 | BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds. | |||
GenBank | BT066672 | 1e-178 | BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds. | |||
GenBank | HQ858785 | 1e-178 | HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961904.1 | 1e-169 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-77 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | K3Z8E6 | 1e-167 | K3Z8E6_SETIT; Uncharacterized protein | ||||
STRING | Si022816m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-80 | MYB family protein |
Publications ? help Back to Top | |||
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