PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00025.1.g03190.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 281aa MW: 30301.1 Da PI: 5.9474 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 106.2 | 1.8e-33 | 40 | 94 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 cprCds ntkfCyynnyslsqPryfCk+C ryWtkG +lrnvPvGgg+rkn++ Zjn_sc00025.1.g03190.1.sm.mk 40 AFCPRCDSPNTKFCYYNNYSLSQPRYFCKGCCRYWTKG-SLRNVPVGGGCRKNQRG 94 56**********************************95.9*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.229 | 40 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-27 | 41 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MPHYQPKHKI RAYIHVCPST DDILQIDEPL ISHRRIAAPA FCPRCDSPNT KFCYYNNYSL 60 SQPRYFCKGC CRYWTKGSLR NVPVGGGCRK NQRGKSARST LAAAAASGGA AAFSGRGTVR 120 PDLILEGMVG NQPVSDDKPV VAGRSAIDLA LLYAEFLKPQ PPPGEQCPAE PESVDTSSGS 180 SSGMSPKPQA GSALLEPRWC PDARGEELSF SVDQSCYDSL GLPTDGGDLI LPSTWCHESK 240 YELFDPLPED AMSLHDSIAG ADDVWSNAFA CQGLEAALCR P |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN393719 | 5e-57 | JN393719.1 Sorghum bicolor clone Sbdof25 Dof (Dof) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654467.1 | 1e-101 | PREDICTED: uncharacterized protein LOC102700144 | ||||
TrEMBL | A0A1D8F0J0 | 1e-104 | A0A1D8F0J0_9POAL; Dof protein | ||||
STRING | OB05G25870.1 | 1e-100 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-30 | Dof family protein |