PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00025.1.g02700.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 426aa    MW: 46532.8 Da    PI: 10.4974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00025.1.g02700.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17196243148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00025.1.g02700.1.am.mk 196 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 243
                                   79******************************99************97 PP
2Myb_DNA-binding53.36.5e-17249293147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T +Edel+++++  lG++ W++Ia  ++ gRt++++k++w+++
  Zjn_sc00025.1.g02700.1.am.mk 249 RGNFTDDEDELIIRLHSVLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 293
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23187246IPR009057Homeodomain-like
PROSITE profilePS5129417.186191243IPR017930Myb domain
SuperFamilySSF466895.99E-29195290IPR009057Homeodomain-like
SMARTSM007177.6E-14195245IPR001005SANT/Myb domain
PfamPF002493.1E-15196243IPR001005SANT/Myb domain
CDDcd001673.33E-11198243No hitNo description
PROSITE profilePS5129427.722244298IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-27247298IPR009057Homeodomain-like
SMARTSM007174.1E-16248296IPR001005SANT/Myb domain
PfamPF002497.4E-15249293IPR001005SANT/Myb domain
CDDcd001676.69E-12251294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPAAEPHTVS SSSGLLSSLG YAAEFFRVLS SIFVTDSTLH APTSPPLLSS NSSQAAPQRQ  60
GLSTKRKCRC RTRTAAEVVR QDTRAPLHST PRRAPHRNHR QRQPLLLPDR SQPNSNPPAH  120
VKLARKTPSG RSIYRQIEKP GRARAPYIRA PRASSETGNL CSLARAPRGP AGSQACDCER  180
ESMGRSPCCE KAHTNKGAWT KEEDERLVAY IRAHGEGCWR SLPKAAGLLR CGKSCRLRWM  240
NYLRPNLKRG NFTDDEDELI IRLHSVLGNK WSLIAGQLPG RTDNEIKNYW NTHIKRKLLA  300
RGVDPQTHRP LSAVSAAPRA VAAVTTALLP PVMTVPAAPT FAARAVESSS DDGGRSSNSS  360
SSGVSTGEPP RCPDLNLDLS VGLPVVDTPT SPRPVCLCYH LGLRDGQACS CQGTQRFTYR  420
RPLELE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-291962987108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725211e-172EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
GenBankHF6794281e-172HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638107.11e-118transcription factor MYB8
SwissprotQ9SZP14e-91MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A0E0PMV11e-117A0A0E0PMV1_ORYRU; Uncharacterized protein
TrEMBLA2Y4Y51e-117A2Y4Y5_ORYSI; Uncharacterized protein
TrEMBLQ5TKI81e-117Q5TKI8_ORYSJ; Myb transcription factor
STRINGORUFI05G18670.11e-118(Oryza rufipogon)
STRINGOS05T0429900-011e-118(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4434833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-86myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]