PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00025.1.g02060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 461aa MW: 49742.4 Da PI: 9.9998 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158 | 3.8e-49 | 113 | 238 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y ++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t sgy Zjn_sc00025.1.g02060.1.am.mk 113 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYCFDPWELPARAVMGGKEWFFYVPRDRKYRNGDRPNRVTVSGY 192 79***************************.99***************8777899*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zjn_sc00025.1.g02060.1.am.mk 193 WKATGADRMIRGENSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 238 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-57 | 112 | 262 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.777 | 112 | 262 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-24 | 114 | 238 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MRTRPPTARP GARQPRCPSA PPARPGIWLA LSPSGSFRAA WRMTARAALQ LRQGRLGRVS 60 RCLRAACARY AMSRDLDDWH YGAAGGAAAG SSGESMGGGG EAAGDSHDND LVMPGFRFHP 120 TEEELIEFYL RRKVEGRRFN VDLIADLDLY CFDPWELPAR AVMGGKEWFF YVPRDRKYRN 180 GDRPNRVTVS GYWKATGADR MIRGENSRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP 240 PAADAEPLTH KSEISLCRVY KRSGIDDGRG QPSSSSTQAS AGRRTRAGRH MSTSPASSPL 300 SPIPSSFHLL QGECPSASPP AIMDQMMITA DNVSQLVLPP TARAFAPSGN SLAAVAPAEG 360 ATILASTDSL LNMAAVPMGI SGPVDKLGTV VGDSQAYANH ISAATGSDFL PLPSTQPMSQ 420 VAPLGALPMT APLSSIDDKL GWDWNPVPDT RTRDYRTSIF K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-53 | 114 | 263 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 114 | 263 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962060.1 | 1e-154 | NAC domain-containing protein 35 | ||||
TrEMBL | K3Z6L9 | 1e-153 | K3Z6L9_SETIT; Uncharacterized protein | ||||
STRING | Si022103m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 3e-90 | NAC domain containing protein 35 |