PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00025.1.g01900.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 301aa MW: 31317 Da PI: 6.8353

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00025.1.g01900.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.2	5.7e-43	43	141	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ Zjn_sc00025.1.g01900.1.sm.mk 43 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPCQREDAVNSLAYEADMRLRDPVYGCVGVIS 123 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+q ++el +++ Zjn_sc00025.1.g01900.1.sm.mk 124 VLQHRLRQIQQELTRAHY 141 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.842	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-43	43	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGSSSVSSVP VSTTGSVITG TAASSPTVGS ISVGAAGTGT GSPCAACKFL RRKCQPDCVF 60 APYFPPDNPQ KFVHVHRVFG ASNVTKILNE LHPCQREDAV NSLAYEADMR LRDPVYGCVG 120 VISVLQHRLR QIQQELTRAH YELSKYQVAA EAAAAASATV GSNAGPAPMP DFIGNPVPNC 180 TQNFINMGGH SMAATIDGAG FMQHDQFATV QMLGRSYDAD PTTTARVGLS VGGGGDGGYG 240 FGYSSSMGGE HSGLGSISGP FLSPTPPAGT SAPQPRSSGM FSHLRQVYDL NSMHEDPRDP 300 C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-53	39	146	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-53	39	146	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY795560	1e-116	AY795560.1 Triticum aestivum AS2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808846.1	1e-109	LOB domain-containing protein 6-like
Swissprot	A2WXT0	1e-101	LBD6_ORYSI; LOB domain-containing protein 6
Swissprot	Q8LQH4	1e-101	LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBL	A0A2S3HCF2	1e-107	A0A2S3HCF2_9POAL; Uncharacterized protein
STRING	Si024114m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	7e-57	LBD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]