PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00025.1.g00220.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 413aa    MW: 41449 Da    PI: 9.0528
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00025.1.g00220.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.51e-612063662154
                          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelks 80 
                                     +sg++sC dCGnqakk+Cah+RCRtCC+srgfdC thvkstWvpa +rrerqq + aa ++  +   + a+kr+r   +
  Zjn_sc00025.1.g00220.1.sm.mkhc 206 GSGGTSCYDCGNQAKKGCAHNRCRTCCNSRGFDCDTHVKSTWVPAVRRRERQQLAGAAGASPPS--PAGAAKRPRLACQ 282
                                     57889**********************************************9999998777766..6778899999999 PP

                          DUF702  81 kkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149
                                     +++ a s+t++s+a++++++etss          lP++v+ +a+frcv+v+svddg+ e+aYq+av+i+Gh+f+G+Lyd
  Zjn_sc00025.1.g00220.1.sm.mkhc 283 TNTGANSRTSTSNATTPRSFETSSshqdasfresLPRHVRGPALFRCVQVTSVDDGQREVAYQAAVTINGHLFRGLLYD 361
                                     99999*****************9999***************************************************** PP

                          DUF702 150 qGlee 154
                                      G+e+
  Zjn_sc00025.1.g00220.1.sm.mkhc 362 LGAED 366
                                     **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.0E-55209365IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-24211253IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.1E-21317363IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MILLRNLLLT RRSSIGRPPS CDPVLCSAAA TPPRASVASS GQRFASAPDS TAVADWLPSP  60
VGGGRGGDLS LGFNAGPPAA GASSLATGFL GSAASRHQAA AAALGYGAVN AAGDVGMVLV  120
GPAGGSSFHH QRAATAAASP DDPMFPLVAV AQRALDANAA KPAAPGPAIQ FWQAPPPAAA  180
ADGSPGNKPP AVTDYGRGRA DSGGSGSGGT SCYDCGNQAK KGCAHNRCRT CCNSRGFDCD  240
THVKSTWVPA VRRRERQQLA GAAGASPPSP AGAAKRPRLA CQTNTGANSR TSTSNATTPR  300
SFETSSSHQD ASFRESLPRH VRGPALFRCV QVTSVDDGQR EVAYQAAVTI NGHLFRGLLY  360
DLGAEDARAT SAAAQLGSSD LHLGSASANA APDLYSGGSG PLILGGLGYG NTP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047101e-36AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAC1362191e-36AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAP0149611e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-36CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806754.11e-130protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A3L6SZ111e-119A0A3L6SZ11_PANMI; Protein LATERAL ROOT PRIMORDIUM 1-like
STRINGPavir.Cb01442.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-42Lateral root primordium (LRP) protein-related