PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g00270.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 271aa    MW: 29578.8 Da    PI: 10.18
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g00270.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-162065147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    rg W + Ed++l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
  Zjn_sc00024.1.g00270.1.am.mkhc 20 RGHWRPGEDQKLKELVDEYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65
                                    899*****************************.***********996 PP
2Myb_DNA-binding61.81.4e-1973116247
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                      ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  Zjn_sc00024.1.g00270.1.am.mkhc  73 RPFTEEEEERLLAAHRAHGNK-WALIARHFP-GRTDNAVKNHWHVV 116
                                     69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5121566IPR017930Myb domain
SuperFamilySSF466891.65E-2918113IPR009057Homeodomain-like
SMARTSM007172.1E-131968IPR001005SANT/Myb domain
PfamPF002493.0E-162065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-262173IPR009057Homeodomain-like
CDDcd001672.36E-132364No hitNo description
PROSITE profilePS5129428.467121IPR017930Myb domain
SMARTSM007173.8E-1771119IPR001005SANT/Myb domain
PfamPF002491.6E-1672115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2274119IPR009057Homeodomain-like
CDDcd001671.26E-883117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASSSTTNTS NGAKSSSCPR GHWRPGEDQK LKELVDEYGP QNWNSIAEKL EGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLAAHRAH GNKWALIARH FPGRTDNAVK NHWHVVMARR  120
SRERSRLLAR TAHSSSSPSS YPFVTDGAQQ PGSSLCFGFS KSRLGSSGGL FGSSPAAPRI  180
PFFKSYGTIN GGTGASFEVG RYSYGGKQPA ATPLSISFSS PREALGMDLG HGFHGGNDIN  240
KKDYHVDGGD DTMSTRKDVP FIDFLGVGVS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31201207107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0928531e-108FP092853.1 Phyllostachys edulis cDNA clone: bphyem102e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979129.11e-120transcription factor CSA
TrEMBLA0A1E5UNM71e-118A0A1E5UNM7_9POAL; Transcription factor MYB44
STRINGSi026751m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-49myb domain protein 52