PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g07260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 336aa    MW: 36712.4 Da    PI: 7.1678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g07260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-0794116223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +CpdCg+ F r+++L+ H++  H
  Zjn_sc00023.1.g07260.1.am.mk  94 PCPDCGEIFVRQESLQMHQSIrH 116
                                   7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.14193117IPR007087Zinc finger, C2H2
PROSITE patternPS00028093116IPR007087Zinc finger, C2H2
SuperFamilySSF563994.41E-18118335No hitNo description
Gene3DG3DSA:3.90.228.107.8E-12127335IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVEPAGRSAA ARKAKLKQSS SSSERHVKKP LSEVSNNKLQ RGCGLGGSSS SSSSTGGGSF  60
RAGMQLRRLS GCYECHNMVV DPNSSSMRAT TICPCPDCGE IFVRQESLQM HQSIRHAVCE  120
LGLDDTSRNI IEIIFQSSWL KKQSPVCRIE RILKVHNTAR TLARFEEYRD AVKAKAQKKK  180
TKLHPRCTAD GNELLRFHCT ALGCSLGLHS ATHLCGACPT CSIIRDGFFD KSDGIRTMAT  240
SGRAHDAAVP EAASGTEECS RAMLVCRVIA GRVKRPSSNR DDDDDDDDEQ EVEEEAVDEE  300
EYESVAGSAG VYSDMEELVV FNPRAILPCF VVIYKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-142uncharacterized protein LOC112900370
TrEMBLA0A2S3IBV11e-141A0A2S3IBV1_9POAL; Uncharacterized protein
TrEMBLA0A3L6PV111e-141A0A3L6PV11_PANMI; Uncharacterized protein
STRINGGRMZM2G136494_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-85C2H2-like zinc finger protein