PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g03400.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 393aa    MW: 42964.3 Da    PI: 9.977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g03400.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.4e-511082421128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                   lppGfrFhP+d+elv++yL++k++gk    +     + +vd++k+ePwdLp ++  + +ewyfFs +d+kyatg+r+nrat
  Zjn_sc00023.1.g03400.1.am.mk 108 LPPGFRFHPRDDELVMDYLCRKLSGKGgggTYGGINMIDVDLNKCEPWDLPDEACVGGREWYFFSLHDRKYATGQRTNRAT 188
                                   79************************97753333458899***********7666789*********************** PP

                           NAM  79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +sgyWkatgkd+++ ++    +g++vg++ktLvfy+grap+g+ktdWvmhe+ +
  Zjn_sc00023.1.g03400.1.am.mk 189 RSGYWKATGKDRPISRRrgsgSGAVVGMRKTLVFYHGRAPRGSKTDWVMHEFCV 242
                                   ***************9988777778***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5697273IPR003441NAC domain
PROSITE profilePS5100554.759108273IPR003441NAC domain
PfamPF023652.8E-25109241IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDIDGGQFRG RRQGSSASVV RDERRLSRHR PLRAQWSDGD AFGRDRRAGS IKQFGHGDGD  60
TPVVARRGRA VADAVIASRQ RVSLLKPRKK KKKRARAMSS ISLVEARLPP GFRFHPRDDE  120
LVMDYLCRKL SGKGGGGTYG GINMIDVDLN KCEPWDLPDE ACVGGREWYF FSLHDRKYAT  180
GQRTNRATRS GYWKATGKDR PISRRRGSGS GAVVGMRKTL VFYHGRAPRG SKTDWVMHEF  240
CVEGPAVADA GGVAGRPGSP LKEDWVLCRV FYRGRTATAD VEAEAGSLPN ELISLPMPHA  300
PLADAYLLAL DHAPAATIGG FYYQQDDDAD GGLAATQAKS LSSFRELLTG MVERDGGAAE  360
KVELHQDWTE AAYAAGQQSA APAQTWNPFL NSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-4710327715172NAC domain-containing protein 19
3swm_B2e-4710327715172NAC domain-containing protein 19
3swm_C2e-4710327715172NAC domain-containing protein 19
3swm_D2e-4710327715172NAC domain-containing protein 19
3swp_A2e-4710327715172NAC domain-containing protein 19
3swp_B2e-4710327715172NAC domain-containing protein 19
3swp_C2e-4710327715172NAC domain-containing protein 19
3swp_D2e-4710327715172NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793RKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630311e-152EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-131NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-71NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3IAF01e-130A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-66NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]